Scaffold Ga0073581_114535

Overview

Basic Information

• Taxon OID: 3300005264
• Scaffold ID: Ga0073581_114535
• Source Dataset Name: Hydrothermal sediment microbial communities from Guaymas Basin, California, USA 4572. Combined assembly of Gp0115316 and Gp0146562
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Texas, Austin
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5693
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Hydrothermal Sediment Microbial Communities From Guaymas Basin, California, Usa

Source Dataset Sampling Location

• Location Name: Guaymus Basin
• Coordinates
  • Lat. (^o): 27.013056
  • Long. (^o): -111.519722
  • Depth (m): 0 to .12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042625	Metagenome / Metatranscriptome	158	Y
F078539	Metagenome	116	Y
F098044	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073581_1145352	F078539	AGG	MVRPFTDRENFIVASVIMVVSDKMKSVSRETRTNILQYIRETKYPGVTDQDWKDIANGIDAHKKDVFSVMVKAFHESSSNPSVSSNKAFATLDTDMKAEIEDIDFDELKSIVDESDDPKLREYYLTMKQLKRDFDDDRKK*
Ga0073581_1145354	F098044	N/A	MNTTSITNKQAVIGVNSTYETVLVIEGIILNNPMMSDLQDIAKLNKTNLCKMALMEFMRNPVSSRKLKRLFIAANNDDKFRFVMQGGQL*
Ga0073581_1145356	F042625	GGAGG	MTDKAEKDKLWKDLKIQWSYLKRDSGADEVKKGEAKKRINEIQEALKLDKTDWNQPRSGPPGSHLTNAGASPMPSNNALVEKILGTVLDMKRTVNEDLIALTQKINNLEEVVKKGACNCAPPSDTPLD*