Scaffold Ga0073581_101930

Overview

Basic Information

• Taxon OID: 3300005264
• Scaffold ID: Ga0073581_101930
• Source Dataset Name: Hydrothermal sediment microbial communities from Guaymas Basin, California, USA 4572. Combined assembly of Gp0115316 and Gp0146562
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Texas, Austin
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14750
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (15.62%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Hydrothermal Sediment Microbial Communities From Guaymas Basin, California, Usa

Source Dataset Sampling Location

• Location Name: Guaymus Basin
• Coordinates
  • Lat. (^o): 27.013056
  • Long. (^o): -111.519722
  • Depth (m): 0 to .12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025034	Metagenome	203	Y
F040581	Metagenome / Metatranscriptome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073581_10193023	F040581	AGAAG	MEFLENGNFNGIKFLGKRRVYNGYLNKEQSWKEYQQWAEKNIY*
Ga0073581_10193027	F025034	N/A	MDSKKAYEIMKEEYVDREALELCNQIEKQLERIISYDDGFLNDRTFDEIKKSAIKLLKEWHL*