Scaffold Ga0073581_101090

Overview

Basic Information

• Taxon OID: 3300005264
• Scaffold ID: Ga0073581_101090
• Source Dataset Name: Hydrothermal sediment microbial communities from Guaymas Basin, California, USA 4572. Combined assembly of Gp0115316 and Gp0146562
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Texas, Austin
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18844
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (82.14%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Hydrothermal Sediment Microbial Communities From Guaymas Basin, California, Usa

Source Dataset Sampling Location

• Location Name: Guaymus Basin
• Coordinates
  • Lat. (^o): 27.013056
  • Long. (^o): -111.519722
  • Depth (m): 0 to .12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F014691	Metagenome	260	N
F015290	Metagenome	255	N
F019588	Metagenome	228	N
F019935	Metagenome	226	Y
F023017	Metagenome	211	Y
F024453	Metagenome	205	Y
F029623	Metagenome	187	Y
F040421	Metagenome	161	Y
F042112	Metagenome	158	N
F056226	Metagenome	137	N
F072934	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073581_10109012	F056226	AGGAGG	MRAYDILLFLVCLEASIGFIASIDLFSTTYVDPSAVQLTDWNVQEIQNQSSSPSLLDTAIDGLVKAIPQFLNMLLAIAIVYIPLTQTLGVPTEVALLFQGAVYLIYVWAIIQFLSGRSVKYME*
Ga0073581_10109014	F007460	AGGTGG	MDDEEGIGIGTAIFVVMLNIVFAIVFFFLVGSVMCGILPPLTTIVGIDETTPFGQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQYQEEEEM*
Ga0073581_10109015	F015290	AGGAGG	MLNNKGQAGEIAVFVILVFMVAFAYIFISPVVQNIKDVTPTIADATSWTNAQTQAMNWLFRAWYAFPFFAFIALLVWLIKRAIEKRSGEVV*
Ga0073581_10109016	F024453	AGGAGG	VKMEIPERDGIVMYFAILQNLAQRPDLTDLERQALDFASSLLYQSVYGEEISEVGEEVKSVREEGREEDMDKVRSVHELAQVRRANAKQ*
Ga0073581_1010902	F019935	AGG	MPKVKETANRTVVHVGDLWKRYHRASPKTKKRWKFRIKDVGRLRYSELILCKPPNGDWQTYAWSFSKGQVKKGKRKLLIYDAKAFEILQKLKENDDLRGWKLAFKG*
Ga0073581_10109020	F042112	GGA	MTFDEYSSAFPQFEEKYVSKLAYPHLLFIQIQKIMDRIDAGGDGKEELESLKALLKPSWRGEIDVKTERCRREMEREINRIARVKERVGITTYKEMKRAAIVRYVREYVQHVIEKLDEVGLLLIEERGVLRGGGLML*
Ga0073581_10109024	F023017	GAG	MRLKKEKREEMKQKIIEFLKNADGHIASIPMLARAIQASSPTAKSIVFELEVERKVSVVMLGGECVVKLEGG*
Ga0073581_10109026	F029623	GAG	MNTYAKYVRARFERGNLIVEISKDAFKDAETRKEATKELQQIIKTYFSIRFFIRLSIVYAFTALFCACVALLMLLK*
Ga0073581_1010905	F072934	GAGG	MVGIDIERLLADEEIREKMNEWNREKAKRRLESMKNLSEPHRRYLEKIASGEWKVW*
Ga0073581_1010907	F019588	GGAGG	MGEEKRIEEEVRGVLERLKVPYSVEIVIVDDKSGKVVFRWRRGRGNLVKGMRKTIEVLDRKIGIPVKDLLK*
Ga0073581_1010908	F040421	N/A	MRGERVRAITMLTLAFTIGFKSIILFLQHSFGFAFALLLLAWTCICFAFPDQLIGASIGQDLKLGEVIEKWVRRRELKRK*
Ga0073581_1010909	F014691	AGGAGG	MSRGIGFVSAILILIFVVVGVFTLSIAWSEIPVEPQANTSLANTSSIIPALTSFLPYLVLVVILAMAIGVFLSLVRVR*