Basic Information | |
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Taxon OID | 3300005264 Open in IMG/M |
Scaffold ID | Ga0073581_100056 Open in IMG/M |
Source Dataset Name | Hydrothermal sediment microbial communities from Guaymas Basin, California, USA 4572. Combined assembly of Gp0115316 and Gp0146562 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Texas, Austin |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 45550 |
Total Scaffold Genes | 66 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 49 (74.24%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 1 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Hydrothermal Sediment Microbial Communities From Guaymas Basin, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Guaymus Basin | |||||||
Coordinates | Lat. (o) | 27.013056 | Long. (o) | -111.519722 | Alt. (m) | Depth (m) | 0 to .12 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F008501 | Metagenome | 332 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0073581_1000568 | F008501 | N/A | MIFCVQDRGGPAHCHLVLPHVTKMEKYNRMEFKLKNSSVDLTDLAIGIVVLGIVVSIGATILLNVRDTNTSGDTAYNLADSAAAGLAEYGNWFDIIVIVGVAAVILSLIFMAFGRRGGGSSVTY* |
Ga0073581_1000569 | F008501 | GGA | MEIKLKNSSVDLTDLAIGIVVLGIVVTVGATILLNVRDTNYVVSATCNDTSNIHTGCDSAWTLADSAASGIAEYGNWFDIIVIVGVAAVILSLIFMAFGQRGSGSGMQSY* |
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