Scaffold Ga0074076_100116

Overview

Basic Information

• Taxon OID: 3300005257
• Scaffold ID: Ga0074076_100116
• Source Dataset Name: Hot spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - YNP_Beowulf Spring_D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14809
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (85.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.733
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N
F011233	Metagenome / Metatranscriptome	293	N
F026309	Metagenome / Metatranscriptome	198	Y
F027904	Metagenome / Metatranscriptome	193	N
F067921	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074076_10011621	F026309	AGGAGG	MSLPAPLSNPNLFIGLVVFIVASILLYLGRIPLSAWTTIVGVLLGYYFGYQHALMEARRRGG*
Ga0074076_10011629	F067921	GGTGG	VMESFERVDDRLLRNGQYLLVSYSGAKNPAQAMFTGFRVVKHNVTTLYYNFATEVPNFLPMAPYGTSPGPTNSPPYIDNFSFSLQEVKNVTDMFDITKTGDAYQVFYGISPSYLRVMNKVQRQFVSVLEQNIYPSNSFVEMGVDGFQSPLNNPSEKTEFIVFVNLTYNVTLMNTATIPIMPAFNFVVNRMILEPLGQAELKKAILAGFPIRSLGAVDSSIMISPDNYPGLVTLSYREIYGG*
Ga0074076_10011630	F027904	GGTGG	MEKYEPPEYDLFNLNNGSTAIGTTPAPLLYEGQANAAVIVPPDLTLRVKQVVIQNATTSLITVQLLAVSTVSGAPTPVAKTPPIPVPASSAVTLDEDEWSISVKSGYSLVAVSSAANSANVFVKAYFVKGTGSPI*
Ga0074076_10011632	F011233	GAG	LAIPWFLPFVKGWRYHVPQLQTQLLSGIPVSFTGTYTVLNGEFPGYFVSAAIGTTDPNFITRASADGLTVIEVTVGELRDARVYRNQMGEPNILSYGSYIRGFPLPVYALSLSGDGLPFYQSIKIEVVPRNQPALITGFAANIIEIYDVDLFKESVKEFFESITPSPSTVPTPPGFVAEEVVSAKLPVKVT*
Ga0074076_10011633	F006070	AGG	MTLYPYLVVDLPITDTNTHTYRTDPFNPLTPTQPGISLVRLGESVPPVRAFNIYVYNYANAALSVQVIANENAKNYQYGALLDGLDYQSESGYPDFNVGSPFTVPAGSTSAPSVQAIQSDFYTSAAERYLSVALTYSTPPTSGFVRAHIDLFYGGV*