3300005257: Hot spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - YNP_Beowulf Spring_D

Overview

Basic Information

• IMG/M Taxon OID: 3300005257
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045212 | Gp0052315 | Ga0074076
• Sample Name: Hot spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - YNP_Beowulf Spring_D
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 20124990
• Sequencing Scaffolds: 22
• Novel Protein Genes: 33
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota	3
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon BE_D	2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D	2
All Organisms → Viruses → Predicted Viral	6
Not Available	8

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.733
  • Long. (^o): -110.709
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N
F011233	Metagenome / Metatranscriptome	293	N
F018963	Metagenome / Metatranscriptome	232	N
F022017	Metagenome / Metatranscriptome	216	N
F026309	Metagenome / Metatranscriptome	198	Y
F026924	Metagenome / Metatranscriptome	196	Y
F027904	Metagenome / Metatranscriptome	193	N
F033507	Metagenome / Metatranscriptome	177	Y
F040183	Metagenome / Metatranscriptome	162	N
F042427	Metagenome / Metatranscriptome	158	Y
F059131	Metagenome	134	N
F067921	Metagenome / Metatranscriptome	125	N
F083455	Metagenome / Metatranscriptome	113	Y
F084460	Metagenome / Metatranscriptome	112	N
F087444	Metagenome / Metatranscriptome	110	Y
F092367	Metagenome / Metatranscriptome	107	Y
F095752	Metagenome / Metatranscriptome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0074076_100071	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota	19513
Ga0074076_100076	All Organisms → cellular organisms → Archaea	18459
Ga0074076_100090	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon BE_D	16709
Ga0074076_100116	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D	14809
Ga0074076_100385	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota	7222
Ga0074076_100544	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota	5649
Ga0074076_100889	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon BE_D	3996
Ga0074076_100982	All Organisms → Viruses → Predicted Viral	3744
Ga0074076_101060	All Organisms → Viruses → Predicted Viral	3541
Ga0074076_101080	All Organisms → Viruses → Predicted Viral	3484
Ga0074076_101400	All Organisms → Viruses → Predicted Viral	2867
Ga0074076_101446	Not Available	2804
Ga0074076_102421	All Organisms → Viruses → Predicted Viral	1944
Ga0074076_102807	Not Available	1740
Ga0074076_102971	All Organisms → Viruses → Predicted Viral	1672
Ga0074076_103972	Not Available	1337
Ga0074076_104897	Not Available	1116
Ga0074076_106744	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D	878
Ga0074076_107483	Not Available	822
Ga0074076_107519	Not Available	819
Ga0074076_107640	Not Available	811
Ga0074076_107923	Not Available	783

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0074076_100071	Ga0074076_10007129	F027904	VEHKYEPPDYDLFNLNNGSTTIGTSPVTLLYEGQPNAAVYDPPDLTLRVKQVIIQNTTSSPITVQLLAVAAPNTTLPSPIPKTPPIPVNANSAVTLSEDEWSISIRAGYALAAVSSAASSANVFAKCYFTKGTGSPA*
Ga0074076_100071	Ga0074076_10007133	F006070	MTLYRYLVVDLPIRDTNTHTYRTDPFDPLIPTQPGISLVRLGESVPPVRAFNIYVYNFANAALNVQMIANENAKNYAFGNLLDGLNYFTEESYPDFNVGSAVTVPAGSLSTPSVEAIQSDFYKDAAERYLSVALTYSATPTSGFVRAHIDLFYEGF*
Ga0074076_100071	Ga0074076_1000717	F026924	MSVGKVCWREHYKFEASKIVHLGRHGFHIPVIVYGHDPDPEKAQEDLCINVYGFYEPIGSFRENQLILPPKKGVRVEQEG*
Ga0074076_100076	Ga0074076_10007610	F042427	MNKAIETGKSETGGATDSVPLPLAPRECECPCHVGGESHSCGGMCWHPWLDTDNYTVELASSTNNVDHYVQLYAICSFGKLKFLVFESSNGLLKRFEVN*
Ga0074076_100090	Ga0074076_1000902	F092367	MSENNAINVKRHFEKIDATVAKILRMLNHDLELGLEDDVVVALKLLLYLLHVVEQKAVTKEEKEVVRQVKAQIVEYVMEGE*
Ga0074076_100090	Ga0074076_10009026	F095752	MVSVPTLLEIDPYLRILLETAHQDGWDARPLYEALILDEMDYFTFKKVFLEYLSQEFQEIALSVFNTIERKMIEVSES*
Ga0074076_100090	Ga0074076_1000903	F087444	MSEIKNPKSDSGAGTAKSLSIPQIDPVFSYETEGGNIFVYLVKAGFAVFLFASFDDTHAEYAYAIETLVAKPALVTKPFVNVAKTVWDMLEQAERAFYNPFIQNPFSKLLKEDHEARTKLIVTVQKLLDASGE*
Ga0074076_100116	Ga0074076_10011621	F026309	MSLPAPLSNPNLFIGLVVFIVASILLYLGRIPLSAWTTIVGVLLGYYFGYQHALMEARRRGG*
Ga0074076_100116	Ga0074076_10011629	F067921	VMESFERVDDRLLRNGQYLLVSYSGAKNPAQAMFTGFRVVKHNVTTLYYNFATEVPNFLPMAPYGTSPGPTNSPPYIDNFSFSLQEVKNVTDMFDITKTGDAYQVFYGISPSYLRVMNKVQRQFVSVLEQNIYPSNSFVEMGVDGFQSPLNNPSEKTEFIVFVNLTYNVTLMNTATIPIMPAFNFVVNRMILEPLGQAELKKAILAGFPIRSLGAVDSSIMISPDNYPGLVTLSYREIYGG*
Ga0074076_100116	Ga0074076_10011630	F027904	MEKYEPPEYDLFNLNNGSTAIGTTPAPLLYEGQANAAVIVPPDLTLRVKQVVIQNATTSLITVQLLAVSTVSGAPTPVAKTPPIPVPASSAVTLDEDEWSISVKSGYSLVAVSSAANSANVFVKAYFVKGTGSPI*
Ga0074076_100116	Ga0074076_10011632	F011233	LAIPWFLPFVKGWRYHVPQLQTQLLSGIPVSFTGTYTVLNGEFPGYFVSAAIGTTDPNFITRASADGLTVIEVTVGELRDARVYRNQMGEPNILSYGSYIRGFPLPVYALSLSGDGLPFYQSIKIEVVPRNQPALITGFAANIIEIYDVDLFKESVKEFFESITPSPSTVPTPPGFVAEEVVSAKLPVKVT*
Ga0074076_100116	Ga0074076_10011633	F006070	MTLYPYLVVDLPITDTNTHTYRTDPFNPLTPTQPGISLVRLGESVPPVRAFNIYVYNYANAALSVQVIANENAKNYQYGALLDGLDYQSESGYPDFNVGSPFTVPAGSTSAPSVQAIQSDFYTSAAERYLSVALTYSTPPTSGFVRAHIDLFYGGV*
Ga0074076_100385	Ga0074076_1003854	F033507	MVKSNVLDVDVVQSTTSSGTLTVNLSVTCPSSANGCNVNQVGSTYYLYGVLDGYYYCGLQMGNQSVQYMWTLNISATPVSLASGATVSIEITYFDTLPNKPYYTETWAFTLNSNGQASGEFSACMVPVTIFPESSVGIKVTSVKSASAQPINYTSSSIGIIPE*
Ga0074076_100544	Ga0074076_10054410	F018963	LDSLGDRPVGAKLMFPYVRGEDGSVTDTLIMSFRTGRIVHSKLSVNKYGHGYRAYTLLPANYLMYEAYRTNKGRASIKISVIDVSPNPLSPYRVKDIWVMYEGVSPVTLIEDLPWNIRGIIEGNSGELPLYEYLETEVPR*
Ga0074076_100889	Ga0074076_1008893	F095752	MVSVPALLEIDPYLRILLETAHQDGWDARPLYESLILDEMDYFTFRRVFLEYLSQQFQEIALSVFTKIEEVMLSAGASVPQ*
Ga0074076_100982	Ga0074076_1009824	F040183	MKLKYPFPQRFHYLTVLGKYLTPNTTIVASGANTGPLTANTVCDFVQTPNHKELAVNLTIQAVSGTFATGQGLTAYFDVLDPVEPQNVNVNSSERPPVLELKLNSTAITTAPTTIRLIIANGVATVWINNASTVLGYMNVPYIWQVRFAITGTSPSFSIVGTYEARE*
Ga0074076_101060	Ga0074076_1010604	F006070	MTLYRYLVVDLPIRDTNTHTYRTDPFDPLIPTQPGISLVRLGESVPPVRAFNIYVYNFANAALNVQMIANENAKNYEYGNLLDGLNYFTEESYPDFNIGSAVTVPAGSLSTPSVDAIQSDFYMNAAERYISVALTYSATPTSGFVRAHIDLFYEGF*
Ga0074076_101080	Ga0074076_1010803	F018963	LSRGSVGLDTLGDRPVGTKLMFPYVRGEDGSVTDTLIMSFRTKRVVYSKLSVNKFGHGYRTYVLLPANYVMYEAYRTGRGRASIKISVIDVSPNPLSHFRVKDIWVMYEGVSPVTLVEDLPWNIRGIIEQNSGELPLYEYLETEVPK*
Ga0074076_101080	Ga0074076_1010805	F033507	VVGVATSTTSTEGTLTVSLSVTCPSSATGCNVNQIDGVYYLYGVLDGYYYCGLQMGNQSVQYDWTLNVSATPTSLASGATVFVEVTYFDTLPNKPYYTETYPFTLNSNGQASGEFSVCMVPVTIFPESSVGIKVTSVKLASDQPISYTSSGITIIPED*
Ga0074076_101400	Ga0074076_1014004	F067921	MYFERINDKILRNGQYLLLSYSGAKNPLQAMFTGFRVVKHNVTTLYYNFATQVPNFLPMAPYGTSPGPTNSPYYIDNFSFSLQQVKNVTDMFKITNTGDAYQVFYGISPSYLRVVNKIQQQFVSVLEQNIYPSPSFVEMGIDGFQSPLNNPSEKTEFIVFVNLTYNVTLMNTATIPIMPAFNFVINRMTLEPLDREELKKAILAGFPIRSLGAVDSSIMISPDNYPGLITLSYKEIYGG*
Ga0074076_101446	Ga0074076_1014465	F042427	MSNLETQTSNSGGATNSVPLPLTLPGCECPCHVGGEPILCGAMCWHPQLDADKYVVELTSSTNNVDHYVQLLAVYSGGKLRYLVFDPSNGSARRFEVV*
Ga0074076_102421	Ga0074076_1024211	F067921	MLETFSRIEDRILRNGQYLLVSYSSSQHPDESSYTGFRVTKHNFTTLYYNFATEVSNFLPMAPFGGQASSTTSPPYISNFKFSLQLVQNVTDMFDLSRNYDAYQVFYGIAPSYLRTMLQIQQQFIAVLEQNINPSQSFVEMGIDGFQSPLFAPDPRTEFIVFSNLTYNMTLMNTATIPIMPAFNFVINRMTLEPLSKQEIKKAILAGFPVRTLGAVDSAIPVSRDNYPGLQTVTYKEVYGGGS*
Ga0074076_102421	Ga0074076_1024212	F027904	VQCKYEPPTYDLFNLNNGSTLVGQSPVTLLYEGQPNATVYAPPDLTLRVKQIIIQNATTSPITVQLLAVAAPNTSLPGPIPKTPPIPVNAGSAVTLSEEEWGIAVRSGYGLSAVSSAANSANVFVKCYFTKGTGMPV*
Ga0074076_102807	Ga0074076_1028071	F059131	IEVTVGDLRDARVYRNQMGEPNILSYGAYIRDFPLPVYALSLNGDGLPFYQSIKIEIIPRNQPAFITGFAANIIEIYDVNLFKESVKEFFESITPSTVPPVVPTPPRFVANEVVSTKLPVKVT*
Ga0074076_102971	Ga0074076_1029712	F018963	VQSNVFTVGDKPIGTKLVFPFVRSEDGSIVDTLIMSFRSGRIVRSRLSGNKTRGYRTYLLFPANYVMYEVYRTNRGRASIKVSVIEVPPNPLKHYKVKDVWVMYEGVTPITFLEELPDNIRRIIEHNFEELPLYEYLETEVPK*
Ga0074076_103254	Ga0074076_1032542	F018963	VQSNMFTVGDKPIGTKLVFPFVRSEDGSIVDTLIMSFRSGRIVRSRLSGNKTRGYRTYLLFPANYVMYEVYRTNRGRASIKVSVIEVPPNPLKHYKVKDVWVMYEGVTPITFLEELPDNIRRIIEHNFEELPLYEYLETEVPK*
Ga0074076_103972	Ga0074076_1039721	F083455	MHMDLFSYQLGISSLWAKDFIVALLGTALAVSLTLANKKGESVFIQLAMIMPVAFAIHALPHINYISLNTIFDYGIIAIGISLVLDYITTKAERPDLKYRFINMYILLTLYAIIKYPSDVLVVCVNSVLITIVFALITYIPPVDDIL*
Ga0074076_104897	Ga0074076_1048973	F042427	MSNLENLNLSSNSGGATNSVPLPLTLPACECPCHVGGEPYSCGGMCWHPQLDADEYTFELASSTNNVDHYVQLLAVYSAGRLRYLVFDPSNGSAHRFEVV*
Ga0074076_106744	Ga0074076_1067442	F059131	NILSYGAYIRDFPLPVYALSLNGDGYPLPVDQNRNNTENQPAFITGFAANIIEIYDVNLFKESVKEFFESITPSTVPPVVPTPPRFVANEVVSTRLPVKVT*
Ga0074076_107483	Ga0074076_1074831	F022017	VQVIANENAKNYQYGALLDGLDYQSESSYPDFNVGSPVTVASGSLQPGVQTIQADFYSTSAERYISVALTYSTAPTTGFVRAHIDLFYEGF*
Ga0074076_107519	Ga0074076_1075191	F084460	MNNKNMSQINPDDLLQKIDEIVNKAIAKYLVKQAGPEEINVKFTKNWILVFLPNGYLKISRKFNEGSYKLKILQYKEKK*
Ga0074076_107640	Ga0074076_1076402	F026924	LSVSKVCWRQHYKFEASKIVHLGRHGFHIPVIVYGHDPDPEKAQEDLCINVVGFYEPIGSFRENQLILPPKKGERV*
Ga0074076_107923	Ga0074076_1079232	F026924	MSVSKVCWRQHYKFEASKIVHLGRHGFHIPVTVYGHDPDPEKAQEDLCINVVGFYEPIGSFRENQLILPPKKGERV*