NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074075_15373

Scaffold Ga0074075_15373


Overview

Basic Information
Taxon OID3300005256 Open in IMG/M
Scaffold IDGa0074075_15373 Open in IMG/M
Source Dataset NameHot spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - YNP_Beowulf Spring_E
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8564
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon OSP_C(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameNorris Geyser Basin, Yellowstone National Park
CoordinatesLat. (o)44.733Long. (o)-110.708917Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011233Metagenome / Metatranscriptome293N
F027904Metagenome / Metatranscriptome193N
F067921Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0074075_153731F011233GAGLTIPWFLPFVKGWRYHVPELQRQLLSGIPVSFSGNFTVLNGEFPGYFVSAAIGTTDPNFITRASADGLTVIEVTVGDLRDARVYRNQMGEPNILSYGAYIRDFPLPVYALSLNGDGLPFYQSIKIEIIPRNQPAFITGFAANIIEIYDVNLFKESVK
Ga0074075_153733F027904GGTGGMEKYNPPEYDLFNLNNGSTLVGTSPVTLLYEGQPNATVVVPPDLTLRVKQVIIQNTTSSVITVQLQAVTTQTGLPSPVNKTPPIPVPANSAVTLDEDEWSINVKTGYSLAAVSSAANSANVFVKAYFVKGTGSPI*
Ga0074075_153734F067921GGGGGMYFERINDKILRNGQYLLLSYSGAKNPLQAMFTGFRVVKHNVTTLYYNFATQVPNFLPMAPYGTSPGPTNSPYYIDNFSFSLQQVKNVTDMFKITNTDDAYQVFYGISPSYLRVVNKIQQQFVSVLEQNIYPSPSFVEMGIDGFQSPLNNPSEKTEFIVFVNLTYNVTLMNTATIPIMPAFNFVINRMTLEPLDREELKKAILAGFPIRSLGAVDSSIMISPDNYPGLITLSYKEIYGG*
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