3300005256: Hot spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - YNP_Beowulf Spring_E

Overview

Basic Information

• IMG/M Taxon OID: 3300005256
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045212 | Gp0052141 | Ga0074075
• Sample Name: Hot spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - YNP_Beowulf Spring_E
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 22259846
• Sequencing Scaffolds: 27
• Novel Protein Genes: 39
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D	6
All Organisms → Viruses → Predicted Viral	6
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon OSP_D	2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon BE_D	1
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon OSP_D	2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon OSP_C	1
All Organisms → cellular organisms → Archaea → TACK group	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Norris Geyser Basin, Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.733
  • Long. (^o): -110.708917
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N
F011233	Metagenome / Metatranscriptome	293	N
F018963	Metagenome / Metatranscriptome	232	N
F022017	Metagenome / Metatranscriptome	216	N
F023140	Metagenome / Metatranscriptome	211	Y
F026309	Metagenome / Metatranscriptome	198	Y
F026924	Metagenome / Metatranscriptome	196	Y
F027904	Metagenome / Metatranscriptome	193	N
F033507	Metagenome / Metatranscriptome	177	Y
F040183	Metagenome / Metatranscriptome	162	N
F048413	Metagenome / Metatranscriptome	148	N
F052042	Metagenome / Metatranscriptome	143	Y
F067921	Metagenome / Metatranscriptome	125	N
F071411	Metagenome / Metatranscriptome	122	Y
F076262	Metagenome / Metatranscriptome	118	N
F077500	Metagenome / Metatranscriptome	117	Y
F083455	Metagenome / Metatranscriptome	113	Y
F085906	Metagenome / Metatranscriptome	111	N
F087444	Metagenome / Metatranscriptome	110	Y
F090626	Metagenome / Metatranscriptome	108	Y
F092367	Metagenome / Metatranscriptome	107	Y
F095752	Metagenome / Metatranscriptome	105	N
F097669	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0074075_10762	Not Available	1436
Ga0074075_11615	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D	6663
Ga0074075_11967	Not Available	2093
Ga0074075_12146	All Organisms → Viruses → Predicted Viral	2058
Ga0074075_12620	All Organisms → cellular organisms → Archaea	4417
Ga0074075_12660	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D	4505
Ga0074075_12773	Not Available	5801
Ga0074075_13027	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon OSP_D	1675
Ga0074075_13170	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon BE_D	7734
Ga0074075_13263	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae	2129
Ga0074075_13314	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota	3176
Ga0074075_13572	All Organisms → Viruses → Predicted Viral	1036
Ga0074075_13608	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon OSP_D	11001
Ga0074075_13973	All Organisms → Viruses → Predicted Viral	1426
Ga0074075_14240	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D	2066
Ga0074075_14430	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D	2385
Ga0074075_14522	All Organisms → Viruses → Predicted Viral	1521
Ga0074075_15092	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D	5312
Ga0074075_15283	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon OSP_D	3220
Ga0074075_15373	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon OSP_C	8564
Ga0074075_15627	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon OSP_D	8604
Ga0074075_15854	All Organisms → cellular organisms → Archaea → TACK group	2432
Ga0074075_15860	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D	2426
Ga0074075_16011	Not Available	1159
Ga0074075_16593	All Organisms → Viruses → Predicted Viral	1047
Ga0074075_16653	All Organisms → cellular organisms → Bacteria	3257
Ga0074075_16707	All Organisms → Viruses → Predicted Viral	4354

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0074075_10762	Ga0074075_107622	F048413	MDKITIWISYGKDYAEYKYILTKIDEIAEKWNIDKYLLRYLILKEFANNEKWQNELIEKLKKNG*
Ga0074075_11615	Ga0074075_1161511	F026924	VCWREHYKFEASKIVHLGRHGFHIPVTVYGHDPDPEKAQEDLCINVVGIYEPIGSFRENQLILPPKKGERV*
Ga0074075_11615	Ga0074075_116152	F095752	VKREGKSKWFLSPALLEIDPYLRILLETAHQDGWDARPLYEALILDEMDYFTFKKVFLEYLSQEFQEIALSVFNTIERKMIEVSES*
Ga0074075_11967	Ga0074075_119673	F087444	MPPRRRLHVAGVGNSHKCVRLSAPKVKNMAEQDINPKSDSGAGTAKSQSVPQIDPVFSYQTEGGNIFVYLVKAGFAVFVFATFDDTHAEYAYAIETLVAKPALVTKPFVNVAKTVWDMLEQAERAFYNPFIQNPFSKLLKEDHEARTKLIVTVQKLLDASGE*
Ga0074075_12146	Ga0074075_121461	F026924	MSVSKVCWRQHYKFEASKIVHLGRHGFHIPVIVYGHDPDPEKAQEDLCINMVGIYEPIGSFRENQLILPPKKGXRVEQEG*
Ga0074075_12620	Ga0074075_126206	F026309	MSLPAPLSSPNLFIGLVIFVVASILLYLGRIPLSAWTTIVGVLLGYYFGYQHGQYVLRRGVR*
Ga0074075_12660	Ga0074075_126606	F026309	MSLPAPLSNPNLFIGLVVFIVASILLYLGRIPLSAWTTIVGVLLGYYFGYQHALLKERGTGG*
Ga0074075_12773	Ga0074075_127732	F027904	VECKYDPPTYDLFNLNNGSTLVGQSPVTLLYEGQPNAAVYAPPDLTLRAKQIIIQNATTSPITVQLLAVAAPNTSLPGPIPKTPPIPVNAGSAVTLSEEEWGIAVRSGYG*
Ga0074075_12773	Ga0074075_127735	F022017	MRTLRNYQYGAFLDGLDYQSESGYPDFNVGSPITVPAGSTSAPSVEAIQSDFYTSAAERYLSLALTYSTAPSAGFVRAHIDLFYGGV*
Ga0074075_13027	Ga0074075_130273	F092367	MSENNVSINITQRFEKIDATVAKILRMLNHDLELGLEDDVVVALKLLLYLLHILEQKAVTKEEKETVRQVKAQIVEYVTGE*
Ga0074075_13170	Ga0074075_131704	F095752	MVSVPALLEIDPYLRILLETAHQDGWDARPLYESLILDEIDYFTFRRVFLEYLSQEFQEIALSVFNKIEEVMLRSAGSPISQ*
Ga0074075_13212	Ga0074075_132129	F018963	VQSNMFTVGDKPIGTKLVFPFVRSEDGSIVDTLIMSFRSGRIVRSRLSGNKTRGYRTYLLFPANYVMYEVYRTNRGRASIKVSVIEVPPNPYKHYKVKDVWVMYEGVTPITFLEELPDNIRRIIEHNFEELPLYEYLETEVPK*
Ga0074075_13263	Ga0074075_132632	F083455	MHVDLFSYQLGISSLWAKDFIVALLGIALAVSLTLANKKGESLLIQSTMIMPVAFAIHALPHINYISLNTIFDYGIIATGISLVLDYITTKAERPDLKYRFINMYILLTLYAIIKYPSDVLEFALNSVLITIVFALITYIPPVDDIL*
Ga0074075_13314	Ga0074075_133148	F092367	MSNKEKMQSSVRFEKIDATVAKILNMLYRDLELGLEDDIVVALKLLLYLLNIIQQKAVTKEEKEAVREVKAQIVEYVTGE*
Ga0074075_13572	Ga0074075_135721	F052042	PASTWLDPPVLLVSYDQVSSDVINWADNVFTSAGYTPSSPGVINVPSNTEYIPNYGYVKYGYAPSTITLNFTGTPELKQLHMVYDMLDDTVLMYFSIIVPNWNPGTKAQYVYKFPVSLLKTQQSINQYAVSGLTPTTTSTPPPNNQPYFLGGLKFDDTVEQTIRNALGEAWANTLQMQSAPQFAISFDWYKLGVFMGYKPSNGFLPAIYVGNPVYMTGTSVNYNYPHGDSLMAIAFADIHKNPAQPQTYYQPIITNYGYAFPAFHGLPENLGSCPSSYGSNSYYCIPILGFAGQLDTFDLGLNIDKFGSIVPGESFGIHGAYIIPITLPPRSDWGGISSMRMKV
Ga0074075_13608	Ga0074075_136081	F067921	VMESFERVDDRLLRNGQYLLVSYSGAKNPAQAMFTGFRVVKHNVTTLYYNFATEVPNFLPMAPYGTSPGPTNSPPYIDNFSFSLQEVKNVTDMFKITNTGDAYQVFYGISPSYLRVMNKVQQQFVSVLEQNIYPSNSFVEMGVDGFQSPLNNPSAKTEFIVFVNLTYNVTLMNTATIPIMPAFNFVVNRMILEPLGREELKKAILAGFPIRSLGAVDSSIMISPDNYPGLVTLSYREIYGG*
Ga0074075_13608	Ga0074075_1360810	F023140	LKLHKRILLSNVFIGLVTVPVYILLKSFPFLAVFGVGVLTTLTVLILFFYFLGAKFVGTWAVLQKFAVTLPTSLVLTRLVEDVPRNPYLDYVVLFLVGYTVSTPLIFLTYHVTRWLYVKKGTT*
Ga0074075_13608	Ga0074075_1360817	F018963	LDTLGDRPVGAKLMFPYVHGEDGSVTDTLIMSFRTGRIVHSKLSVNKFGHGYRAYTLLPANYLMYEAYRTNKGRASIKISVIDVSPNPLSHFRVKDIWVMYEGVSPVTLLEDLPGNIRVIIEGNSGELPLYEYLETEVPK*
Ga0074075_13608	Ga0074075_136082	F027904	MEKYEPPEYDLFNLNNGSTAIGTTPAPLLYEGQANAAVIVPPDLTLRVKQVVIQNATTSLITVQLLAVSTVSGAPTPVAKTPPIPVPASSAVTLDEDEWSISVKTGYSLAAVSSAANSANVFVKAYFVKGTGSPI*
Ga0074075_13608	Ga0074075_136086	F006070	MTLYPYLVVDLPITDTNTHTYRTNPFNPLTPTQPGISLVRLGESVPPVRAFNIYVYNYANADLNVQVIANENAKNYQYGAFLDGLDYQSESSYPDFNVGSPVTVASGSLQPGVQTIQADFYSTSAERYISLALTYSTAPTTGFVRAHIVLFYEGF*
Ga0074075_13608	Ga0074075_136089	F076262	LSSQPVIRGSYTLASPQTVSVAATGSATVSISFTPQGAGSLYVYITLPTGVTATISIGAQTVSLSSGSNQFLIPANVAIGNVTINNSGATAESVVVWALFIEVA*
Ga0074075_13973	Ga0074075_139732	F033507	MVRSKVVGVATSTTSTEGTLTVSLSVTCPSSATGCNVNQIDGVYYLYGVLDGYYYCGLQMGNQSVQYDWTLNVSATPTSLASGATVFVEVTYFDTLPNKPYYTETYPFTLNSNGEASGEFSVCMVPVTIFPESSVGIKVTSVKSTSDQPISYTSSGITIIPED*
Ga0074075_14240	Ga0074075_142405	F026924	MSVVKICWRMHYKFEASKIVHLGWHGFHVPVTVYGHDPDPEKAQEDLCINVDGFYEPIGSFRENELILPPKKGVKVEDVGESK*
Ga0074075_14430	Ga0074075_144304	F026924	MSVGKVCRREHYRFEASKIFYVGWYSFHMPVIVYGHDPDPGKAQEDLCINECGYYEPIGSSRENNLILSPMMGVKVEDAGESK*
Ga0074075_14522	Ga0074075_145222	F006070	MTLYPYLVVDLPITDTNTHTYRTNPFNPLTPTQPGISLIRLGESVPPVRAFNIYVYNYANAALNVQVIANENAKNYQYGALLDGLDYQSESGYPDFNVGSAVAVPAGSLSTPSVQAIQSDFYKDAAERYLSVALTYSATPTSGFVRAHIDLFYEGF*
Ga0074075_15092	Ga0074075_150922	F033507	MVRSNIAEVVASTTSSGSGGTLTVNLSVTSGSGVTQIDGVYYLSPEANGYYTCGLQMNNQSVRYSWTLHVSATPTSLANGATVSVEITYFDTYPSKPYYTETWPFTLNSNGQDSGEFSACMVPSTIFPESSVGVKVVGVKSATDQSIPYTSSGITIIPQ*
Ga0074075_15092	Ga0074075_150926	F040183	VKLKYPFPQRFHYLTALGGYLTPNTTIVASGANTGPLTANTVCDFVQTPNHKELAVNLTIQAVSGTFSTGQGLTAYFDVLDPVEPQNVNANSSERPPVLELKLNSTAITTAPTTIRLIIANGVATVWINNASTVLGYMNVPYIWQVRFAITGTSPSFSIVGTYEARE*
Ga0074075_15283	Ga0074075_152834	F077500	MTEEQICKRKHHKWLAKRLAYVGMGNYREVSFFVWTHSTNHDDVQNDTICRRTRQGFVPVGTFDGCLLDPVRRIRRR*
Ga0074075_15373	Ga0074075_153731	F011233	LTIPWFLPFVKGWRYHVPELQRQLLSGIPVSFSGNFTVLNGEFPGYFVSAAIGTTDPNFITRASADGLTVIEVTVGDLRDARVYRNQMGEPNILSYGAYIRDFPLPVYALSLNGDGLPFYQSIKIEIIPRNQPAFITGFAANIIEIYDVNLFKESVK
Ga0074075_15373	Ga0074075_153733	F027904	MEKYNPPEYDLFNLNNGSTLVGTSPVTLLYEGQPNATVVVPPDLTLRVKQVIIQNTTSSVITVQLQAVTTQTGLPSPVNKTPPIPVPANSAVTLDEDEWSINVKTGYSLAAVSSAANSANVFVKAYFVKGTGSPI*
Ga0074075_15373	Ga0074075_153734	F067921	MYFERINDKILRNGQYLLLSYSGAKNPLQAMFTGFRVVKHNVTTLYYNFATQVPNFLPMAPYGTSPGPTNSPYYIDNFSFSLQQVKNVTDMFKITNTDDAYQVFYGISPSYLRVVNKIQQQFVSVLEQNIYPSPSFVEMGIDGFQSPLNNPSEKTEFIVFVNLTYNVTLMNTATIPIMPAFNFVINRMTLEPLDREELKKAILAGFPIRSLGAVDSSIMISPDNYPGLITLSYKEIYGG*
Ga0074075_15627	Ga0074075_156273	F097669	MSTVEEEIKTLPKSWVEAQGEAPNYTYKCVQCSYVNNYKEVVIRHYYGTHVSDELKNKAFTIQKVALKDYGITVTLVVCSICKWSTDGRNFASVASHFYHSHVNPAVRNVTNPLVKQILERLKGLSENELRQVLDYVNSLA*
Ga0074075_15854	Ga0074075_158545	F071411	MSEDDKPVIQDEKYGRHTHRTEKHIDNIAEQLIAQQLEDNLQDVIDDAIDAQLYIDLSTKEPVGFDIGIAIGGPNIRLIYSRGACQLRGWWGSLNDIKDVDNEICETILDYLTEIYRQ*
Ga0074075_15860	Ga0074075_158602	F026924	MSVSKVCWRQHYKFEASKIVHLGRHGFHVPVIVYGHDPDHEKAQEDLCINVYGFYEPIGSFRENQLILPPKKGVRVEQEG*
Ga0074075_16011	Ga0074075_160113	F026924	VCWREHYKFEASKIVHLGWHGFHVPVTVYGHDPDPEKAQEDLCINVDGFYEPIGSFRENELILPPKKGVKVEDVGESK*
Ga0074075_16593	Ga0074075_165932	F085906	MSESLIFDNLTSFLENFRGEFQSQVRQIGDGIYEETGKLTVYLPGENGGRVMGEYNIHAVIYDVVQVIRLDGRYYDVSDDRWHTVSLLLLFKYNELLDETFC*
Ga0074075_16653	Ga0074075_166532	F090626	MSRIVKFENIYFGKNSLVKLFANKTHLENSTDYDGTALAFLLDISDFTNTDTLLSHFAIINGNEIRPILVEWNLRAIHGRLLLLLNLLPGPHDTKMLLKRFESTIENQRPETIKYIAGQYAKALTNAKGLKQIYNFLVQRIQQLKSIGIKKSEEEVRRLAEIYR*
Ga0074075_16707	Ga0074075_167074	F027904	VEQKYEPPDYDLFNLNNGSTTIGTSPVTLLYEGQPNAAVYAPPDLTLRVKQVIIQNTTSSPITVQLLAVAAPNTTLPSPIPKTPPIPVNANSAVTLSEDEWSISIKAGYALAAVSSAASSANVFAKCYFTKGTGSPA*
Ga0074075_16707	Ga0074075_167077	F006070	MTLYRYLVVDLPIRDTNTHTYRTDPFDPLIPTQPGISLVRLGESVPPVRAFNIYVYNFANAALNVQMIANENAKNYEYGNLLDGLNYFTEESYPDFNVGSAVAVPAGSLSTPSVEAIQSDFYKDAAERYLSVALTYSATPTSGFVRAHIDLFYEGF*