Scaffold Ga0074075_13608

Overview

Basic Information

• Taxon OID: 3300005256
• Scaffold ID: Ga0074075_13608
• Source Dataset Name: Hot spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - YNP_Beowulf Spring_E
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11001
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon OSP_D (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location

• Location Name: Norris Geyser Basin, Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.733
  • Long. (^o): -110.708917

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N
F018963	Metagenome / Metatranscriptome	232	N
F023140	Metagenome / Metatranscriptome	211	Y
F027904	Metagenome / Metatranscriptome	193	N
F067921	Metagenome / Metatranscriptome	125	N
F076262	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074075_136081	F067921	GGTGG	VMESFERVDDRLLRNGQYLLVSYSGAKNPAQAMFTGFRVVKHNVTTLYYNFATEVPNFLPMAPYGTSPGPTNSPPYIDNFSFSLQEVKNVTDMFKITNTGDAYQVFYGISPSYLRVMNKVQQQFVSVLEQNIYPSNSFVEMGVDGFQSPLNNPSAKTEFIVFVNLTYNVTLMNTATIPIMPAFNFVVNRMILEPLGREELKKAILAGFPIRSLGAVDSSIMISPDNYPGLVTLSYREIYGG*
Ga0074075_1360810	F023140	N/A	LKLHKRILLSNVFIGLVTVPVYILLKSFPFLAVFGVGVLTTLTVLILFFYFLGAKFVGTWAVLQKFAVTLPTSLVLTRLVEDVPRNPYLDYVVLFLVGYTVSTPLIFLTYHVTRWLYVKKGTT*
Ga0074075_1360817	F018963	GGAGG	LDTLGDRPVGAKLMFPYVHGEDGSVTDTLIMSFRTGRIVHSKLSVNKFGHGYRAYTLLPANYLMYEAYRTNKGRASIKISVIDVSPNPLSHFRVKDIWVMYEGVSPVTLLEDLPGNIRVIIEGNSGELPLYEYLETEVPK*
Ga0074075_136082	F027904	GGTGG	MEKYEPPEYDLFNLNNGSTAIGTTPAPLLYEGQANAAVIVPPDLTLRVKQVVIQNATTSLITVQLLAVSTVSGAPTPVAKTPPIPVPASSAVTLDEDEWSISVKTGYSLAAVSSAANSANVFVKAYFVKGTGSPI*
Ga0074075_136086	F006070	AGG	MTLYPYLVVDLPITDTNTHTYRTNPFNPLTPTQPGISLVRLGESVPPVRAFNIYVYNYANADLNVQVIANENAKNYQYGAFLDGLDYQSESSYPDFNVGSPVTVASGSLQPGVQTIQADFYSTSAERYISLALTYSTAPTTGFVRAHIVLFYEGF*
Ga0074075_136089	F076262	GAG	LSSQPVIRGSYTLASPQTVSVAATGSATVSISFTPQGAGSLYVYITLPTGVTATISIGAQTVSLSSGSNQFLIPANVAIGNVTINNSGATAESVVVWALFIEVA*