Scaffold Ga0074075_11615

Overview

Basic Information

• Taxon OID: 3300005256
• Scaffold ID: Ga0074075_11615
• Source Dataset Name: Hot spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - YNP_Beowulf Spring_E
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6663
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location

• Location Name: Norris Geyser Basin, Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.733
  • Long. (^o): -110.708917

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026924	Metagenome / Metatranscriptome	196	Y
F095752	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074075_1161511	F026924	GAG	VCWREHYKFEASKIVHLGRHGFHIPVTVYGHDPDPEKAQEDLCINVVGIYEPIGSFRENQLILPPKKGERV*
Ga0074075_116152	F095752	GGA	VKREGKSKWFLSPALLEIDPYLRILLETAHQDGWDARPLYEALILDEMDYFTFKKVFLEYLSQEFQEIALSVFNTIERKMIEVSES*