Scaffold Ga0073579_1190517

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1190517
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 73084
• Total Scaffold Genes: 99
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (21.21%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020790	Metagenome / Metatranscriptome	222	Y
F040861	Metagenome / Metatranscriptome	161	N
F048320	Metagenome	148	N
F048411	Metagenome	148	Y
F049943	Metagenome	146	N
F062174	Metagenome	131	N
F090879	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_11905171	F048320	N/A	MRTLYIILLLTTFSLLTSCGSVKGQAYVDVNENIDFENGEDLRYRTRFKVGYKIYLGEKHNILKDKRKKKEE*
Ga0073579_119051763	F090879	N/A	MEQLDTLTLNQSEENMDFSLHDHYAERIKYHMTMLNYYLKEEKNDRMGN*
Ga0073579_119051775	F049943	N/A	MYKFKTKYKSCFTAIDELQYVRQGDSPPSPYKDNAPREKQANYNFSIVSPVSSGKYIPINSYQLTGKGVSTKAKIYNEYDQYNNDLVDGHTVFGKIDNYAKRRLFKKDKVIYDLIY*
Ga0073579_119051782	F062174	AGAAG	MTKTMIDPKITKDLDNYLSYHRKLKRMKELMGGEYRMEMNVESCRPLIEDGFDLSDIVEYFILELRDYTDNRYMDDIRRLKEIEAEKAEANDA*
Ga0073579_119051784	F048411	N/A	MKMTINWNDGTYVFHHNKITKSTLQNNTDCDNITNEITEMFNQLQQ*
Ga0073579_119051792	F040861	N/A	MLETLKPIKTTPTGIYFRMADGRIGYANHQYARVSVTREGIRNGEYYKEDNEIGDRLYQINSREEINREYDYDGVKKTFSGIARIKYNDISEAINALQNFNNKNCGEYAVELRKNKILKQYEEHKALNVKSYLTKERVKEADAWVEAYNEGYNEGFTEGVASIEDKLVKLINNL*
Ga0073579_119051793	F020790	N/A	MRISKQMMDDKLLQIATFEEKYGEDHGITSVNAMKKYCSNKQYRERVHAFNKASVNTIKKYFKLI*