Scaffold Ga0073579_1172261

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1172261
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28818
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (55.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011527	Metagenome	290	Y
F024421	Metagenome	206	Y
F033961	Metagenome	176	Y
F098074	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_117226117	F033961	AGGAGG	MNKEKAINILLQHAIQSCEKIEIKKQAGHTEEINDDLTAAILFLEQDRSKNKVDTKIDITGLQVNSHKGA*
Ga0073579_117226135	F098074	AGGAG	MVDQTQEEILEVQIKNKQIKYATDTSKMFDEWLKQCPVVYYLSEQVESEENNTNNFDKKVRRK*
Ga0073579_117226138	F011527	N/A	MLVYFQFWRCGYYARGLVEADSLDAASKALWAEHVGTFKWEDQTKDQPENANYLTIEEYKYERSSDGKTEPENEARSQVG*
Ga0073579_117226139	F024421	AGGAG	MSEALMEKLNQKMKLEAKWASELLSNGAVTVEMVNISKEVKTVEREIKEEVEHK*