Scaffold Ga0073579

Basic Information
Taxon OID	3300005239 Open in IMG/M
Scaffold ID	Ga0073579_1171200 Open in IMG/M
Source Dataset Name	Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005239 Open in IMG/M

Scaffold ID

Ga0073579_1171200 Open in IMG/M

Source Dataset Name

Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

J. Craig Venter Institute (JCVI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29373
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (27.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

29373

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (27.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location
Location Name	Gulf of Maine, USA
Coordinates	Lat. (^o)	43.2393	Long. (^o)	-68.368612	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gulf of Maine, USA

Coordinates

Lat. (^o)

43.2393

Long. (^o)

-68.368612

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006896	Metagenome / Metatranscriptome	362	Y
F014383	Metagenome / Metatranscriptome	263	Y
F032988	Metagenome / Metatranscriptome	178	N
F068718	Metagenome / Metatranscriptome	124	N
F073566	Metagenome / Metatranscriptome	120	N
F090234	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_117120015	F006896	N/A	MANEIYPVSWWGNPVENGWGGIYYDLSVTSEIPSLLSTLQARASYYENVTCTTATLTELENIE*
Ga0073579_117120017	F014383	N/A	MANEIYDSTWWGNTIQTASSIGTSTEMIQGQFNMNDREEVEAVKCLADSIHKIGIQDIQN
Ga0073579_11712002	F090234	N/A	MEIFDEELNNYYESLEDNSECMECGIDVQLGKQYCCFSCLDASNR*
Ga0073579_117120029	F068718	N/A	MLKDIIDLLNEDDWLISDEDILIAKGKYQSTTNWKEFKYNIKQRRL*
Ga0073579_117120035	F032988	GAG	MEKKNLAAELNKIAEEFKVRLQRGARLDKTVATGKFANSFNVSVKDDSIEIKSDAKYAKYVVDGTYPSNSTAGWEKKKKSIESWIKAKGIRPYRKLKSGYKFAKTSTLKDSAYKSAVFAIMKSIADRGTIKRFGYKGSNLFERVYKEIEDKIGIEITEAYAEDLRIELRKIINISNE*
Ga0073579_11712007	F073566	AGGA	MVKNKIEGNMDYSKSIEEIRNKTINLLLEFTDNKNVSNYLRDVDRELERLDSALSREPKVGWVAIDDMMWDMLKEDTNLTRVCVEFKVREEKDYLSINKRNIKINLVD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073579_1171200

Overview

Ecosystem & Geography

Associated Families

Sequences