Scaffold Ga0073350_120737

Overview

Basic Information

• Taxon OID: 3300005223
• Scaffold ID: Ga0073350_120737
• Source Dataset Name: Sylvan Springs Unknown 12.1A - Microbial communities from the Yellowstone National Park, bulk metagenomes as controls for mini-metagenomic methods
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Stanford University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3199
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hotspring → Microbial Communities From The Yellowstone National Park, Bulk Metagenomes As Controls For Mini-Metagenomic Methods

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.699217
  • Long. (^o): -110.767467
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026046	Metagenome / Metatranscriptome	199	Y
F062913	Metagenome / Metatranscriptome	130	N
F071410	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073350_1207371	F062913	N/A	NLSLINHFLNAVFRLLPCLFMERSRAVEVFSNINCEGNTQIISIINRALELIRGGECDKAYNELNKLRLFL*
Ga0073350_1207373	F026046	N/A	MAGLLEIYEGYLNKPSCNALDNIRIGRDGIGYRKLRKEDIPIEWLNYAKKHGIKVKNKTLIIGDALDPIDPNCIPLMNVFYPQGSNGQWCCTPSIAQYTTNGSQTPAQTCFSANTAGVINIPYIGIALINANGNLDLLMDTNNVISSATPNWINPASSPPNIICGTSQNNGTVTLSFSAMPTTTFTISIAYLLIGTNTLASGGVFSTVIEWTGINYQPQVNMPLTINIYLGAQ*
Ga0073350_1207374	F071410	AGTAG	MSKDKDLSSYRFNKESTLQLIAVGISNQVSKARGSVVSITTSNILSELNGDKPIVGFVAWRSIVKYFLDALVSRGYMTVYRKGNKKPYNTARVHVYMIPKRLRHNIPNPLFSADPNLIYVFLKSVLSNVD*