Scaffold Ga0073352_1786

Overview

Basic Information

• Taxon OID: 3300005220
• Scaffold ID: Ga0073352_1786
• Source Dataset Name: Norris Geyser Basin Crystal Spring 9 - Microbial communities from the Yellowstone National Park, bulk metagenomes as controls for mini-metagenomic methods
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Stanford University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 926
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hotspring → Microbial Communities From The Yellowstone National Park, Bulk Metagenomes As Controls For Mini-Metagenomic Methods

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.7287
  • Long. (^o): -110.714783

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080245	Metagenome	115	N
F081547	Metagenome / Metatranscriptome	114	Y
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073352_17862	F080245	N/A	MIFVWTAKVVMPGFREEIFVSPALINSLGELTEDVYEVGMFAVPHAGHALLFLPTMVINLNDNLMKQLEDTSIEDLNYPLNTIDHVFT*
Ga0073352_17863	F087442	GAGG	MMREGLVKAGNLIVDCKPCYIAGTGFTKDDMYVVSEGNVVFKWYDKIAVITVSQEGVKITLVDVIDVRFLVERNENCMVTKL*
Ga0073352_17864	F081547	N/A	YYLSCGIVKGGTLDPETYTVNNPELMMVRLGRDLYIVSNDLKQLIPIEPIKELLASETSKVYNEAMMQGNEVKPA*