3300005220: Norris Geyser Basin Crystal Spring 9 - Microbial communities from the Yellowstone National Park, bulk metagenomes as controls for mini-metagenomic methods

Overview

Basic Information

• IMG/M Taxon OID: 3300005220
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114622 | Gp0115255 | Ga0073352
• Sample Name: Norris Geyser Basin Crystal Spring 9 - Microbial communities from the Yellowstone National Park, bulk metagenomes as controls for mini-metagenomic methods
• Sequencing Status: Permanent Draft
• Sequencing Center: Stanford University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 759013
• Sequencing Scaffolds: 3
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Deltalipothrixvirus → Acidianus filamentous virus 2	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From The Yellowstone National Park, Bulk Metagenomes As Controls For Mini-Metagenomic Methods
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hotspring → Microbial Communities From The Yellowstone National Park, Bulk Metagenomes As Controls For Mini-Metagenomic Methods

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.7287
  • Long. (^o): -110.714783
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021133	Metagenome / Metatranscriptome	220	N
F071411	Metagenome / Metatranscriptome	122	Y
F080245	Metagenome	115	N
F081547	Metagenome / Metatranscriptome	114	Y
F087442	Metagenome / Metatranscriptome	110	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0073352_1401	All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Deltalipothrixvirus → Acidianus filamentous virus 2	916
Ga0073352_1717	Not Available	2872
Ga0073352_1786	Not Available	926

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0073352_1401	Ga0073352_14011	F071411	MSEGDDKMLDILINSADNRTELEKHMDNIAQDLKDNLDDVIENAIDVQLYIDLSTKEPTGFDIGIVIGGPGIRLVYSRGTCKLQGAWGSLNDEKDVDNEICETILDYLTEMYRQ*
Ga0073352_1717	Ga0073352_17171	F021133	MGRRDELIRQIYENGNYAIKKICEMKPDDNMANFSATDCIIGTANTHLALKIAKEKGYPPDVIEYLENQSRQEQWHCRLQIGKPPKLYDFVVAQKHREILLKYGIYVWMGVMPLLGEKIALAKAICWRRNDDPHFVNKFATVDEYYHTTYPLLLLSKYASEEELEKIIELQKEYITNIFKLK*
Ga0073352_1786	Ga0073352_17862	F080245	MIFVWTAKVVMPGFREEIFVSPALINSLGELTEDVYEVGMFAVPHAGHALLFLPTMVINLNDNLMKQLEDTSIEDLNYPLNTIDHVFT*
Ga0073352_1786	Ga0073352_17863	F087442	MMREGLVKAGNLIVDCKPCYIAGTGFTKDDMYVVSEGNVVFKWYDKIAVITVSQEGVKITLVDVIDVRFLVERNENCMVTKL*
Ga0073352_1786	Ga0073352_17864	F081547	YYLSCGIVKGGTLDPETYTVNNPELMMVRLGRDLYIVSNDLKQLIPIEPIKELLASETSKVYNEAMMQGNEVKPA*