Scaffold Ga0066688_10179290

Overview

Basic Information

• Taxon OID: 3300005178
• Scaffold ID: Ga0066688_10179290
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1338
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011803	Metagenome / Metatranscriptome	287	Y
F042033	Metagenome / Metatranscriptome	159	Y
F044745	Metagenome / Metatranscriptome	154	Y
F070583	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066688_101792901	F070583	AGGAG	MNDESRVLVRQGARELDRQETEQVSGGLRTLTACTWDPDLGGRDGDGPPEC*
Ga0066688_101792902	F042033	GGA	MNNRVLVRTGARSLSAEEMERVGGGLHTETVCTVPTSVCPNKDGDASIGECGPVC*
Ga0066688_101792903	F044745	AGGAG	MKDQNRVLARKGARDLNEQEVEMVAGGLRTLTACTLAAAGTLDGDTFHSECGSPDQ*
Ga0066688_101792904	F011803	AGGAG	MNDNKRVLIRRGARELTPTETDLINGGFRTLSLCSSSPSPDGDQHIGEVGC*