NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066672_10133283

Scaffold Ga0066672_10133283


Overview

Basic Information
Taxon OID3300005167 Open in IMG/M
Scaffold IDGa0066672_10133283 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1546
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058763Metagenome134Y
F063474Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0066672_101332831F063474GGAGMNMIVIFEDQATKHCQEGKPYLFASALKVRCLCGNLIHPIPGAWCTQCGLKVLEVRTRRT
Ga0066672_101332834F058763GGGGGMWRFANPKEAVQWLRSNAPGRPTGFYLWGSIYVQRAMWDGFAWRWLTEAEQREAAGV

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