NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066815_10112415

Scaffold Ga0066815_10112415


Overview

Basic Information
Taxon OID3300005164 Open in IMG/M
Scaffold IDGa0066815_10112415 Open in IMG/M
Source Dataset NameSoil and rhizosphere microbial communities from Laval, Canada - mgLAC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)522
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location
Location NameLaval, Canada
CoordinatesLat. (o)45.54Long. (o)-73.72Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008262Metagenome / Metatranscriptome336Y
F085296Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0066815_101124151F008262N/AELERLMRRAQRNGPATLRCSGTFRDPTRVRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSARFEFLGQLQARNPFR*
Ga0066815_101124152F085296AGGAMNEHSTPRAGPNTFDGDAISRADREFLASLGDHPLVRHPLYSVPPPPRPNYDGCTTIYERTEAQLACFPAALDWMLVNHAYYTDAFMGKGGIISL

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