Scaffold Ga0072503_129132

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0072503_129132

Scaffold Ga0072503_129132

Overview

Basic Information
Taxon OID	3300005096 Open in IMG/M
Scaffold ID	Ga0072503_129132 Open in IMG/M
Source Dataset Name	Hydrothermal chimney microbial communities from the East Pacific Rise - M vent 7
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	27624
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (64.29%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Chimney In Epr

Source Dataset Sampling Location
Location Name	East Pacific Rise
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F074900	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0072503_12913216	F074900	AGGAG	MTAKIINLADPDEREHAFATVEEAERALAAMVEKFKTQGYRVEEQRPPNEKYPQFAVYDFGDAWIGTYTIEL*

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