Basic Information | |
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Taxon OID | 3300005074 Open in IMG/M |
Scaffold ID | Ga0070431_1037459 Open in IMG/M |
Source Dataset Name | Marine benthic sponge Stylissa massa associated microbial communities from Guam, USA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Utah |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2601 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (78.57%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Marine Benthic Sponge Stylissa Massa Associated → Stylissa Massa Endosymbiont Microbial Communities From Guam |
Source Dataset Sampling Location | ||||||||
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Location Name | Guam | |||||||
Coordinates | Lat. (o) | 13.4388546 | Long. (o) | 144.8224773 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F018267 | Metagenome | 236 | Y |
F025414 | Metagenome | 202 | Y |
F053549 | Metagenome | 141 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0070431_10374592 | F025414 | AGGAG | MQVGSLVRETMDGNIGVILAWENEGWLVSFPKHGMVFHMLPSLLEVVDEAG* |
Ga0070431_10374598 | F018267 | GAGG | VRIGDLISFKPKSFGEDDWSNPCIVLDAYVSDDRQGGGWKDTIWVVWCNGGKFLVNPRLDDIIYLTSSSHLKG* |
Ga0070431_10374599 | F053549 | GGAG | MKVGDLVKWESVLNDSMDYHTEEYGVILKMSKTGHKTKSAQVLFTDGETAWFDTQFLEVVSAHR* |
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