Scaffold Ga0070923_1854596

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070923_1854596

Scaffold Ga0070923_1854596

Overview

Basic Information
Taxon OID	3300005072 Open in IMG/M
Scaffold ID	Ga0070923_1854596 Open in IMG/M
Source Dataset Name	Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 64 soap2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Center for Advanced Technologies in Genomics, Sao Paulo University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	842
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Source Dataset Sampling Location
Location Name	Sao Paulo Zoo, Brazil
Coordinates	Lat. (^o)	-23.651072	Long. (^o)	-46.620675	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036417	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070923_18545962	F036417	AGG	MVLYKRIPTRRLIPTVLVRLATDDGEIAFRARWKHSPLELQRSILFRLRQGSALWFEDEWGRALCFKPECVWGAMVDGR*

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