Scaffold Ga0071350_1013019

Overview

Basic Information

• Taxon OID: 3300005069
• Scaffold ID: Ga0071350_1013019
• Source Dataset Name: Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1977
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.611214
  • Long. (^o): 163.119356

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002387	Metagenome / Metatranscriptome	565	Y
F013184	Metagenome / Metatranscriptome	273	Y
F049617	Metagenome / Metatranscriptome	146	Y
F050154	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071350_10130191	F049617	AGG	MNSEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQDLASALEQEELSGEAMDSMVRTECEGRLDMLVE
Ga0071350_10130193	F050154	AGTAG	MKLHLISLNQDMEKDLNVESKINIQGQIMATEHLLSVATDIMNSSNERVYG*
Ga0071350_10130195	F013184	N/A	MNLKREMRITLNKYPFVIRLEGAVMANNEKEAHEKINLHLNDLGDVDSERYDLNWPDVSWDMEYELC*
Ga0071350_10130196	F002387	GGAGG	MASFLEDVNQMVIDACYQDIAEQLLEDWINSNLDEGQYYADKQFAEMSGDKFVQQEFNKFYELKEGDEDYFE*