Scaffold Ga0071350_1011490

Overview

Basic Information

• Taxon OID: 3300005069
• Scaffold ID: Ga0071350_1011490
• Source Dataset Name: Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2072
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.611214
  • Long. (^o): 163.119356

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F015570	Metagenome	253	Y
F024504	Metagenome	205	N
F029673	Metagenome	187	N
F032957	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071350_10114902	F004231	AGGAG	MSVKPKDFQHEICVYLEGFGEGLVCFDILSPGDELDADHSDDYEIDFAVFDEQDKHITYDISKKQYNHCENKAMDEMRDITTQWHKEWETCFD*
Ga0071350_10114903	F029673	GGAG	LTKAEMIQHLRMAACNENTVTGMANAFDLGAEHERDVIASIIFNMVKEQHLAQNIVDTIRVRE*
Ga0071350_10114904	F015570	AGG	MNDKLDQAFDLLDFDVTDQIRNMAYLAEQRKVATGVTDGTVQRALVRDLTENLRTLQTSNDPLLLRNDVLEEVAVELAKLPFGDTAASYAAFVRAMKS*
Ga0071350_10114905	F024504	AGGAG	VNRKPIGVNAPYRKPDFTFQDMLLDRIKVLEALVVKLEQRIKVLEGK*
Ga0071350_10114908	F032957	AGGAG	MDEFNPTTRMFPRTLQEAFPKDYVNENIFEGAYYSAPHINDVWVLFGLITVISMVSVALWRYF*