Scaffold Ga0071350_1000039

Overview

Basic Information

• Taxon OID: 3300005069
• Scaffold ID: Ga0071350_1000039
• Source Dataset Name: Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18683
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (85.71%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.611214
  • Long. (^o): 163.119356

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000868	Metagenome / Metatranscriptome	853	Y
F004431	Metagenome / Metatranscriptome	438	Y
F004840	Metagenome / Metatranscriptome	421	Y
F013184	Metagenome / Metatranscriptome	273	Y
F015600	Metagenome / Metatranscriptome	253	Y
F017133	Metagenome / Metatranscriptome	242	Y
F021288	Metagenome / Metatranscriptome	219	Y
F063685	Metagenome / Metatranscriptome	129	Y
F080046	Metagenome / Metatranscriptome	115	Y
F103145	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071350_100003911	F004431	AGAAG	MTITYSLWDGAQLLGVDFKASSADEMNKAVAELQKVSKNVVAHMRKVEQN*
Ga0071350_100003912	F063685	AGG	MTIELDNYGFMLDTEWCYIALSWQLLITAGVIFAGYKAYKKWKTTNDN*
Ga0071350_100003915	F103145	AGGAG	MLSENTLNKIVFEYQHGGVKNFHPEISFAERKALLKYLFSIPTHKDCECVK*
Ga0071350_100003916	F080046	GAG	MSLSLANKIAKDKFFLPPSKYTNHKVVEIVSLNEESGIATVILEKYTIGRNANVYKNNNVFTIELPYSEFQNLNGWSK*
Ga0071350_100003926	F004840	AGGAG	MDYEYLVSCQYDYEESPHWKQRYESEFDAWKSFFSFTDWGLANEYSTVNIYTHTGKCYTKIFYRDGRVVTR*
Ga0071350_100003939	F013184	GAGG	MAELKDYAFVIKLAGSVSAKNEKEAWNKINSHVDDLGDVESLKYDLSWPDVSWELEYEL*
Ga0071350_100003944	F000868	AGGCGG	VSFLENENQMVIDAEYSYIGEQLVEDWVNSNLDEGQLYADWCFADMAESNYLKGRFNQFYDLKPGDQYYIEWDEEK*
Ga0071350_100003945	F021288	GAGG	MLGYTQRDLADMTYGVYQADLLINADENPAIHNYLVTAHDFLQGLWAEGYFDNGAE*
Ga0071350_100003947	F015600	GGA	MDTTALPPHLQKMIDAGVSGTDILHGELKSLMLIAEQQYQEISQEEEESDFSDAMISMDRTRAEGRLDAFGEVYALTYQLAFAISERTKARG*
Ga0071350_10000399	F017133	AGGA	MNSLYEKFATVSDYPRGLMNLCPCGQVVLAPAQYHEGFPWWENPNKCKEMWETSH*