Scaffold Ga0071350_1000027

Overview

Basic Information

• Taxon OID: 3300005069
• Scaffold ID: Ga0071350_1000027
• Source Dataset Name: Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20132
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (46.15%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.611214
  • Long. (^o): 163.119356

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012017	Metagenome / Metatranscriptome	284	N
F022191	Metagenome	215	N
F022193	Metagenome	215	N
F028156	Metagenome	192	N
F034162	Metagenome	175	Y
F042315	Metagenome	158	N
F057334	Metagenome / Metatranscriptome	136	N
F084179	Metagenome / Metatranscriptome	112	N
F105021	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0071350_100002712	F042315	N/A	MKKQKSYPRNWAMEHRPSNKWQQVLVARKNKDDRDVKRNAKTLPDLSPTELCDVIDEGYHYFWNQRGRVPPSYSVIR*
Ga0071350_100002714	F105021	N/A	MKTINKLLARWGYKISKTDPAAEQSDLQLAYAALEAACNELRARNKELTRKLAARTSGEWYWRKQAKEARR*
Ga0071350_100002722	F084179	GAG	VWPKLAEGVVGKVCRNKQYNELRVVGEDGREMWTKVGTWLFAGGLVRGERVLVRKVWGSGDDTDAEYEVVRRMDVNEEVPQVPTVVEQPLVEPSTVSELETPVAILPQFQREEPDYPRKQESADDYIARIRAEAAKWANGQGR*
Ga0071350_100002723	F022191	GGA	MADGIKTDGSHGRTTYSPQKLVNDLAVATLEGRGLGLKKHHRLGYVTEEDKRLFQRIVGITVEEFNQRLIGKLDNLADRIVDRMLDTVEDTPLNSLGFNLAVAIDKRQRLAGLNATQGANVNIQVNNYGSLSKEEIVARLSGKTPVPTIQVAPVELPNPNDIDVKKPVAVNVAG*
Ga0071350_100002728	F012017	AGG	MAQKRILIGTPLKGDIPKSYFRTSLQMVTAEIPDVKLDWILLDGPAVQIARNEIAHYAVEQKFDELIFWDKDVLAQRNGEDVTASALMRLIGHDRDIVTAVYSSRSLNTHWHVHPIKGEEPDEAGLQRVERASIGFSKIKVPVFKKIALANIDRVAMLVDPNKSPKLVPELFPMELKGRNTPEHRMKQIWAALSEVKNDEALRARIERELTIRYDEPNAFISEDFGFCDLARAAGYDIWMDTLMVLGHQASVVVPVETGKLLEMLSEPWRKEELAVIKQQMLEAQAAKKK*
Ga0071350_100002729	F057334	N/A	MTNVLGVMVTKRAVDEWLIQPDVEGAREYARISIYAEPEGLNIDGQGLIPWSQLESSRMTYSVRMKKRHASR*
Ga0071350_10000274	F028156	GGTGG	MVINNEFRPVSPDELLARAKLCARLLEVIDEVTTASELIKDGLYWDAYRATNKIELMASEISLDLHGIDIALGEEGKL*
Ga0071350_10000275	F022193	N/A	MTHTDTLDQHVREYYLYHDEQTKFFDDLASTNKPVDAGLDEAAALNWCEQMHDLTGTWNADVWSEKGWW*
Ga0071350_10000278	F034162	N/A	MMRWVEASYRLPAAANLPVEVELAGGGTERRDTVSGDWRPVVRWRTVIDTEPKQRKKKA*