Scaffold Ga0068519_1020981

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068519_1020981

Scaffold Ga0068519_1020981

Overview

Basic Information
Taxon OID	3300005039 Open in IMG/M
Scaffold ID	Ga0068519_1020981 Open in IMG/M
Source Dataset Name	Wastewater microbial communities from Nanji, Korea with extracellular vesicles - Nanji-3um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1075
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location
Location Name	Nanji, South Korea
Coordinates	Lat. (^o)	37.3132	Long. (^o)	126.828	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F058934	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068519_10209811	F058934	AGGA	MRQFSYPNSQFTNILGGASIGWKLNVYDTGTTNYASIYSDVGQTTPTANPVIGDADGFLDSFYWTGTVDVVLTDENDNLIDSAAGIQDLVSTINAVVVAGGVTLPFGTASGSGDTITATLPITSDFSDGGMFIVRANAANTG

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