3300005039: Wastewater microbial communities from Nanji, Korea with extracellular vesicles - Nanji-3um

Overview

Basic Information

• IMG/M Taxon OID: 3300005039
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114451 | Gp0111483 | Ga0068519
• Sample Name: Wastewater microbial communities from Nanji, Korea with extracellular vesicles - Nanji-3um
• Sequencing Status: Permanent Draft
• Sequencing Center: Chunlab, Inc
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 140889442
• Sequencing Scaffolds: 39
• Novel Protein Genes: 44
• Associated Families: 31

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae	1
All Organisms → cellular organisms → Bacteria	4
Not Available	14
All Organisms → cellular organisms → Bacteria → Proteobacteria	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Pedobacter → unclassified Pedobacter → Pedobacter sp. SG918	1
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas paralcaligenes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caldimonas → Caldimonas tepidiphila	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Aequorivita → Aequorivita capsosiphonis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Nanji, South Korea
• Coordinates
  • Lat. (^o): 37.3132
  • Long. (^o): 126.828
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007965	Metagenome / Metatranscriptome	341	Y
F008498	Metagenome / Metatranscriptome	332	Y
F010914	Metagenome / Metatranscriptome	297	Y
F011936	Metagenome / Metatranscriptome	285	Y
F021533	Metagenome / Metatranscriptome	218	Y
F024534	Metagenome / Metatranscriptome	205	Y
F025488	Metagenome / Metatranscriptome	201	N
F032247	Metagenome / Metatranscriptome	180	Y
F032274	Metagenome / Metatranscriptome	180	Y
F039997	Metagenome / Metatranscriptome	162	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0068519_1000376	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae	7349
Ga0068519_1004037	All Organisms → cellular organisms → Bacteria	2474
Ga0068519_1004523	All Organisms → cellular organisms → Bacteria	2340
Ga0068519_1006088	Not Available	2029
Ga0068519_1006891	All Organisms → cellular organisms → Bacteria → Proteobacteria	1911
Ga0068519_1007441	All Organisms → cellular organisms → Bacteria → Proteobacteria	1832
Ga0068519_1009014	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Pedobacter → unclassified Pedobacter → Pedobacter sp. SG918	1662
Ga0068519_1010560	All Organisms → cellular organisms → Bacteria → Proteobacteria	1530
Ga0068519_1010798	Not Available	1513
Ga0068519_1011538	All Organisms → Viruses → Predicted Viral	1460

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0068519_1000376	Ga0068519_10003761	F078624	MKLCIHVRPRDDGQGWAIDVYDGRRAWTKTNLGEQPLNKSEAHRLAHKLRDPKFYT
Ga0068519_1004037	Ga0068519_10040375	F078624	MKLCIHVRPRDDGQGWAVDVFDGRHAWSKTHLGEQPLNKAEAHRLAHKLRDPKFYTARTKRAVNSGGAL*
Ga0068519_1004523	Ga0068519_10045234	F058997	MIIYKGREMTVREACKLMGIDCDDFMAWCKKFALQNYGYAMNYYKRTLKFKKG*
Ga0068519_1004523	Ga0068519_10045235	F055725	MAFFKGCNIDTVKIAELAAQGLSLNSMSKVTGHSKNGIKAALERNSIQYTMGVKERFITVDGVLTSLGDACNAQGFSRKAMYAWRVKRGLNEQDGFDAYVIYQQSKRSIDKPILKFKNATVIYKKERYTLTEISDKLKLNRQRFEVFMRQNRYAQNAFERYCYTRGL*
Ga0068519_1006088	Ga0068519_10060883	F093751	MKTVSEMVKALGEIKYVALVLQVSPRTVDYWIASNQISRASRLDFLNMMKEAGYKMTLKELNDLQPTKKEVSK*
Ga0068519_1006891	Ga0068519_10068912	F011936	LNELQHETRLQKLEDGHDMLSRDYSRLNDAIVKISDSLTAFVVLQEQNKTLINHSEKQTIIIEKMDERVSAIEHQMPQLVESRQWLMVGLGLILSMVITALVALIVKSFEY*
Ga0068519_1007441	Ga0068519_10074411	F024534	VMSNKENRIKSLPDVFMLASGLVQFKYVQDISNANDVNFCVGMAGGHKAFGTPSQYDEFMDKYLTWLETRKS*
Ga0068519_1009014	Ga0068519_10090141	F024534	MSNKENRIKSLPDVFMLASLVQFKYIQTISEPNERNFIVGMAGGYEVFGAPQDYDAFMDKYLTWLEMR*
Ga0068519_1010560	Ga0068519_10105603	F032274	RKYPQQNLICIVSGWVLVAVDAKVRFGGKTMQVSFDFTEQTEIVKREKRKYLEARQDWQRAPKIIVTEEYIALDKKLEPIEEELFELIKKMPLAIEKKIKGKICVVPSGLKTDEDIISRVRELRKQASKIGKELDALFFKTNPEWAKFYGYID*
Ga0068519_1010798	Ga0068519_10107982	F032274	VVSLLKRELGLDKTMQVSFDFTEQTEIVKREKRKPFEARQDWQRAPKIIVTEEYIALDKKLEPIEEELFDLIKKMPLAVEKKIKGKICVIPSGLKTDEELICRVRELRKQASKIGKELDALFFKTNPEWAKFYEYTD*
Ga0068519_1011538	Ga0068519_10115382	F040068	MARSVPKCKRAAYVYDRDFIVVDDISGVLKMRSECAIDGYGFLSSQGDIRNPQEIPPIINEQMAAWPDPRPIGQPVFTPSPDYQYFLFNYFVSSVNGESTTFDATASVGFNAPIASMAWSVDGVYVVSGLVPVVTMTQGLHDLSVLLTDLYGNEQTFTFEYYQPVYLGFDFIDGERFLFIDNEQFDFIG*
Ga0068519_1013616	Ga0068519_10136161	F101016	ARLENAQVKKTEAEALKTMADVEVMYNDAQKRQADQLLEELTALPAAIPTSEELMNEQSIDSGEGEQGGLSPMVEQSSDQGNDGAIDQRVDEPQQPIEPTQSIDIGEGALPIGEGAGIDGGIGLQEPANGDMQEGI*
Ga0068519_1014625	Ga0068519_10146253	F078624	MKLCIHVRPRDDGQGWAVDVFDGRRAWSKTHLGESPLNKAEAHRLAHKLRDPKFYTARTTRAVNSGGAL*
Ga0068519_1015291	Ga0068519_10152913	F076005	MKHFKVRVQYTNGIDFLFECDAVTGWQAGALARVAGRLAGMGGSMDVQETIVQEVA*
Ga0068519_1016182	Ga0068519_10161823	F032247	MTIEDAIFNLETYGRHMGNRFIAINHDKSCELLLKNAVIVLESAGMIERDSVKAWAHCNVKIINKPVPKVDYTTGL*
Ga0068519_1017091	Ga0068519_10170911	F076004	MDTENTVALSNRNGIQTFVQNVEFDRDGRHYDEPCLLMCRGFMGVKNMFVFPLCDAWTVREPEFFKATMQDAAATLFISPTKNDEHVVGDMILHDIDTIIAWRPDDDATHD
Ga0068519_1018971	Ga0068519_10189711	F082613	LAWNITITSSANISGVDITFVYLDAQQNQQTLTVAGPNTTTKDAGIYASKIISVTTSASASNISIGHTNVGYAPWKVIPSRGVSSTTGASIGIDGTANITLQTTFANIADNAIFAGTFDVFSHSYLAALTASAFDTIDTREIGVRLKFNSWSSGNVRLDLSVSAKG*
Ga0068519_1018971	Ga0068519_10189712	F040068	MARSVPKCKRAAYVYDRDFIVVDDISGVLKMRSECAIDGYGFLSSQGDIRNPQETPPIIREQMAAWPDPRPIGQPVFVPSPDYQYFIFNYFIVSVQSRATTFDATATVGLNAPIASMDWYVDDVYVVSGLIPTVTMMGGVHTISVLITDDYGNQQTFSFEYEQGIDLGFNFITGEYFYFIDDVQFDFIG*
Ga0068519_1020981	Ga0068519_10209811	F058934	MRQFSYPNSQFTNILGGASIGWKLNVYDTGTTNYASIYSDVGQTTPTANPVIGDADGFLDSFYWTGTVDVVLTDENDNLIDSAAGIQDLVSTINAVVVAGGVTLPFGTASGSGDTITATLPITSDFSDGGMFIVRANAANTG
Ga0068519_1021792	Ga0068519_10217922	F076004	MNTENTVALSNRNGIQTFVQNIEFDRDGRHYDEPCLLMCRGFMGVKNMFVFPLCDAWTVREPEFFKATMQDAAATLFVSPTKNDEHVIGDMILHDIDTIIAWRPDDDATHDHALMQKEVERTGLLLKVNGQTLVDAR*
Ga0068519_1022701	Ga0068519_10227014	F102701	MSEEKDYDVVLDVLQKHADQLWKITTRSMTSGMGIMDDIRLEQIDQLKEAMELWKNRERN
Ga0068519_1025265	Ga0068519_10252652	F025488	PFYIPAGNATATALYDIVKVSTSGSTADTAGVPAGLMGCVRVSDKDDVPCGVIVGFIADPDYLNQTYRSASTARVALVNYDPQVVLEAQEDDNGTTLAVARIGTPVDLVPGSVDTTTGTSGMQISSATLAGSPGMFRLQQRSFSVDNAAIAGTNTKWLVTFNVHQFKATA*
Ga0068519_1026449	Ga0068519_10264491	F089876	MDEDNLGVGNSKPTEDDGTAIPKAVKSMDTPDAKATVEFVEEKKKQMKESQYRRRFDELSREISMNIVNTTVSYGEKVYEKTGWGSMVFYNKMDNGGYDINVYPQKLTNRDQNRSGVPVSQEPIAFSKILIATSVLAGKVPDAEVIGDDKIYNKAAHDLWARTWTLKGANGQNTLERTYQNLLTYGWAAWRTYPRRVSVKRNGIDKILFDDIYREPMDPDRTWLGVGQSVGDYWSAFEVYYEKDILKDEFFRMCPEAAEY
Ga0068519_1028055	Ga0068519_10280552	F008498	IYRVKKRLWNDSIEDVLRGLFIGKTLHVCCGKSALGDVRVDADPENKPDIVCDAADMTACVADGAFETVLCDPPYNGQFQWNHDLLHELARVATKRIIFQHWFMPANPDGRYKKAQERFALSDVLVWQPKTYFGRVQVVSVFDAL*
Ga0068519_1031378	Ga0068519_10313783	F007965	MRKTDLDKIKKGGKRVGSGRKKSDYKTKTIAFRVRVEFVEPIKKMVKDYVLERLKGDA*
Ga0068519_1033253	Ga0068519_10332532	F090323	MSLETEISQLTKAINELNANFERFFNAQSTPTPQAQTTPIEPEQAALLPDVAKTMNRTRDELQAMCLAATKRNSANRDIIKSIMLNNFEARKISDLADNQVDMCYVMIAEATQDD*
Ga0068519_1033577	Ga0068519_10335771	F046373	MINTFIAEFHCFVVAHNNVDDYRICELNDGNELSSLLPYFEQFDTYELALARVPVEFRPNDEQL*
Ga0068519_1037018	Ga0068519_10370181	F096902	MSGGSLDYVCYRLDDAIDIVASRAKTVLQKAFTAHLRDVSKALHDLEWVFSGDYGEGDETEALSKVVNKKMELEVATNDARIALKQLQDVLAALDA*
Ga0068519_1042637	Ga0068519_10426371	F046955	MAAPRQMTANTLNALKGWPQPAAVDFHTEFDSSVTDEVLPGSVVHLNSDGKYVLGVGTDPVMPLFMFNGSNDPDVQNEGGDPATEKGVFIPINPTGQAMALVAVGAYELVSTAFVAGTYNPNDPLTSADAGDDAGKLDVGTLYTDMIVGFVSRGVVDNGYGHDAVAFWPFPVFPTP*
Ga0068519_1044927	Ga0068519_10449271	F084096	AEEDGKFLRAVNTALVGAGLTVPTSGTVQHEVIAGGITRETLWDSLKVMPNTPSNLEVHVVLVNNITIKEVGKFTHNEMGGSLSEDIMKKGWTLQEFMGVKWIVTIKKGLVATNTMYHFADPKFIGKSYVLEDTTMYIRREAYMLEFFAYETMGGTIGHTSGLARIDFE*
Ga0068519_1048612	Ga0068519_10486122	F046373	MINSFKAESHCFVVAHNNVDDYRICELDAGNELSSLLPHFEQFATYELALARVPVEFRPDDEQL*
Ga0068519_1049390	Ga0068519_10493901	F025488	NATATALYDIVKVSTSGSTADTAGVPAGLMGCVRVSDKDDVPCGVIVGFIADPDYLNQTYRSASTARVALVNYDPQVVLEAQEDDNGTTLAVARIGTPVDLVPGSIDTVTGTSGMQISSATLAGSPGMFRLQQRSFAVDNAAIAGTNTKWLVTFNTHQFKATA*
Ga0068519_1049683	Ga0068519_10496832	F011936	LSEQHEARLQNLENSHNMLVRDYTRLNDAIVKISESLTQLVVIQEQNKEIMSCIERQQSSIDKLDGRLDALEIQQPQLLELRSWVLGGFGTIIGSVLVAMLALVIK*
Ga0068519_1055459	Ga0068519_10554591	F088496	KKFNENYNQNKLDLQRDQHLMSIRQNGEKIGDIEIVDGKITTSGIIGDNQYDNFVELIKGLQGFDIKIDEFYW*
Ga0068519_1055466	Ga0068519_10554661	F051872	QYLRQREMADEIHKRGQELKQLRRDMDRRLKNVEQPIANIAQNEHKQRLDNVSLSLKQAAIDQDFDAIDALLAERDKLLKAEPVAKQEEPLAIDDTNDDGETQEQLQAAAQKWIADNPWYNKLTQAGRDQAAKLEAEYRAKVDCTTEEALAYVAQEMGKDPIVAVLKGKLKSPDVTPRTAERPRVASASESSLDPASRNIYNKMISQGLLKTAAEK
Ga0068519_1062799	Ga0068519_10627991	F021533	MKTIAATVIDDVITPKEQIPDNVKMVVFNGTEYVIYEDGDELPVIE*
Ga0068519_1076718	Ga0068519_10767181	F045749	NYKDALPITNDDRRFCVMYGRIQNENELFDYFGGRDAASDYFETLFGESEKHAGALKTYLLNHKISEDFKPQGRAPDTESRQQMIQATISPEQCSVEDLINKHNCAVINGLILDITWLAKQCEIDGEMLPPTRTLAHILNDMGYQQIENRRVFVKKTNSQHYVWFKPSKKTDSDFAKSEVIDFF
Ga0068519_1079209	Ga0068519_10792091	F010914	MIYKIMIEQKGQFVETGETVECTFEETQVIIEALQSEQGCCVALELVSE*
Ga0068519_1080057	Ga0068519_10800571	F045749	IQNEQELFDYFGGRDAASDYFETLFSESEKHAGALKTYLLNHKISEDFKPQGRAPDTESRQQMIQATISPEQCSVEDLINKHDCAVINGRILDVTWLAKQCEIDGEMLPPTRTLAHILTDMGYQQIEGRRVFVKKTDKRHYVWFKPSKKTDSDIAKNEVVDFFKKGLDEIPF*
Ga0068519_1080059	Ga0068519_10800592	F048174	MSDKGQSNNKDVQSHSEVVEAWLKAEIERLKQDLDRLHRERDAFSRQCSVMAEENAVWEAESKRLTWMIQNHGRVEFEFSGDCYVTFILKNQFKATLGSDDTRVEIDRAMEMCK*
Ga0068519_1083154	Ga0068519_10831541	F040068	ECAIDGYGFLSSQGDIRNPQETPPIIREQMAAWPNPRPIGQPVFTPSPDYQYFIFNYFIVSVQSRATTFDATATVGLNAPIASMDWYVDDVYVVSGLVPTVAMSGGVHTISVLITDDYGNQQTFSFQYEQGVDLGFNFITGEYFYFIDDVQFDFIG*
Ga0068519_1086778	Ga0068519_10867782	F039997	MNQMPKSGRPLVMFPNGSLARCEEVPPDGILVIEPEEPEVEVMEIIDQTQAV
Ga0068519_1089449	Ga0068519_10894491	F032274	VSGWVLVAVDAKVRFGGKTMQVSFDFTEQTEIVKREKRKHLEARQDWQRAPKIIVTEEYIALDKKLEPIEEELFELIKKMPLAIEKKIKGKICVIPSGLKTDEELLCRVRELRKQASKIGKELDALFFKTNPEWAKFYEYTDKT*
Ga0068519_1090554	Ga0068519_10905541	F082613	AAALTQTGTYGANGFTSELAWNITITSSADISGVDITFVYLDAQLNQQTVTVAGPNTTTKDAGIYASKIISVTTSASASNISIGHTNVGYAPWKVIPSRGVSSTTGAGIGIDGTANITLQTTFANIADNAIFAGTFNVFSHSYLAALTASAFDTIDTREIGVRLKFNS