Scaffold Ga0069134_167096

Overview

Basic Information

• Taxon OID: 3300004831
• Scaffold ID: Ga0069134_167096
• Source Dataset Name: Marine surface microbial communities from the North Atlantic Ocean - filtered matter
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 627
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Surface Seawater → Marine Surface Microbial Communities From The North Atlantic Ocean, Enriched With Methanesulfonate

Source Dataset Sampling Location

• Location Name: Leca da Palmeira, Matosinhos
• Coordinates
  • Lat. (^o): 41.226956
  • Long. (^o): -8.720528
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026152	Metagenome	199	Y
F080091	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0069134_1670961	F026152	AGGAGG	LTKKKLEKSKTPKHWTAKAWAEHMLWISGFTNNKEVNYVQSNTRGKVPRKSNKSKQSSKAAV*
Ga0069134_1670962	F080091	AGGA	MSLKLWKFLSVRIKVEDHNGKIHWYDESDCNAHDIGIEYEIEDIINKQGGTFDEEEVGKKQDT*