Scaffold Ga0071340_115882

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0071340_115882

Scaffold Ga0071340_115882

Overview

Basic Information
Taxon OID	3300004827 Open in IMG/M
Scaffold ID	Ga0071340_115882 Open in IMG/M
Source Dataset Name	Chicken cecum microbial communities from Brno, Czech Republic, of chickens treated with various antibiotics - Non treated high erm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Masaryk University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	652
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Birds → Digestive System → Ceca → Unclassified → Chicken Cecum → Chicken Cecum Microbial Communities From Brno, Czech Republic, Of Chickens Treated With Various Antibiotics

Source Dataset Sampling Location
Location Name	Brno, Czech Republic
Coordinates	Lat. (^o)	49.19522	Long. (^o)	16.60796	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001813	Metagenome	630	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071340_1158821	F001813	N/A	GGVIDPGGVQRVFGCCVEGHGLAGTIGEGRTVGLDDPAGLFQP*

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