NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300004827

3300004827: Chicken cecum microbial communities from Brno, Czech Republic, of chickens treated with various antibiotics - Non treated high erm



Overview

Basic Information
IMG/M Taxon OID3300004827 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0114608 | Gp0114670 | Ga0071340
Sample NameChicken cecum microbial communities from Brno, Czech Republic, of chickens treated with various antibiotics - Non treated high erm
Sequencing StatusPermanent Draft
Sequencing CenterMasaryk University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size36763511
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameChicken Cecum Microbial Communities From Brno, Czech Republic, Of Chickens Treated With Various Antibiotics
TypeHost-Associated
TaxonomyHost-Associated → Birds → Digestive System → Ceca → Unclassified → Chicken Cecum → Chicken Cecum Microbial Communities From Brno, Czech Republic, Of Chickens Treated With Various Antibiotics

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal proximal gut

Location Information
LocationBrno, Czech Republic
CoordinatesLat. (o)49.19522Long. (o)16.60796Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001813Metagenome630Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0071340_115882Not Available652Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0071340_115882Ga0071340_1158821F001813GGVIDPGGVQRVFGCCVEGHGLAGTIGEGRTVGLDDPAGLFQP*

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