3300004827: Chicken cecum microbial communities from Brno, Czech Republic, of chickens treated with various antibiotics - Non treated high erm

Overview

Basic Information

• IMG/M Taxon OID: 3300004827
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114608 | Gp0114670 | Ga0071340
• Sample Name: Chicken cecum microbial communities from Brno, Czech Republic, of chickens treated with various antibiotics - Non treated high erm
• Sequencing Status: Permanent Draft
• Sequencing Center: Masaryk University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 36763511
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chicken Cecum Microbial Communities From Brno, Czech Republic, Of Chickens Treated With Various Antibiotics
• Type: Host-Associated
• Taxonomy: Host-Associated → Birds → Digestive System → Ceca → Unclassified → Chicken Cecum → Chicken Cecum Microbial Communities From Brno, Czech Republic, Of Chickens Treated With Various Antibiotics

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Brno, Czech Republic
• Coordinates
  • Lat. (^o): 49.19522
  • Long. (^o): 16.60796
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001813	Metagenome	630	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0071340_115882	Not Available	652

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0071340_115882	Ga0071340_1158821	F001813	GGVIDPGGVQRVFGCCVEGHGLAGTIGEGRTVGLDDPAGLFQP*