NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0071339_107079

Scaffold Ga0071339_107079


Overview

Basic Information
Taxon OID3300004820 Open in IMG/M
Scaffold IDGa0071339_107079 Open in IMG/M
Source Dataset NameChicken cecum microbial communities from Brno, Czech Republic, of chickens treated with various antibiotics - Non treated
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMasaryk University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)537
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Sauropsida → Sauria → Archelosauria → Archosauria → Dinosauria → Saurischia → Theropoda → Coelurosauria → Aves → Neognathae → Galloanserae → Galliformes → Phasianidae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Birds → Digestive System → Ceca → Unclassified → Chicken Cecum → Chicken Cecum Microbial Communities From Brno, Czech Republic, Of Chickens Treated With Various Antibiotics

Source Dataset Sampling Location
Location NameBrno, Czech Republic
CoordinatesLat. (o)49.19522Long. (o)16.60796Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005658Metagenome393Y

Sequences

Protein IDFamilyRBSSequence
Ga0071339_1070791F005658GGAGMARVKKHHKDGLIPTPCYVQGHQPPEQAAQSHIQPGLECLQGWGIHNP

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