NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0071339_106262

Scaffold Ga0071339_106262


Overview

Basic Information
Taxon OID3300004820 Open in IMG/M
Scaffold IDGa0071339_106262 Open in IMG/M
Source Dataset NameChicken cecum microbial communities from Brno, Czech Republic, of chickens treated with various antibiotics - Non treated
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMasaryk University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)564
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Sauropsida → Sauria → Archelosauria → Archosauria → Dinosauria → Saurischia → Theropoda → Coelurosauria → Aves → Neognathae → Galloanserae → Galliformes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Birds → Digestive System → Ceca → Unclassified → Chicken Cecum → Chicken Cecum Microbial Communities From Brno, Czech Republic, Of Chickens Treated With Various Antibiotics

Source Dataset Sampling Location
Location NameBrno, Czech Republic
CoordinatesLat. (o)49.19522Long. (o)16.60796Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028669Metagenome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0071339_1062621F028669AGGAGGMYARREIKKQRFKCWSDQFIINVNKRDGERGGRTLLRIGVMGKGRRAIEKIERGKNCVKRG*

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