Scaffold Ga0071339_100337

Overview

Basic Information

• Taxon OID: 3300004820
• Scaffold ID: Ga0071339_100337
• Source Dataset Name: Chicken cecum microbial communities from Brno, Czech Republic, of chickens treated with various antibiotics - Non treated
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Masaryk University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1726
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Chlamydiae → Chlamydiia → Chlamydiales → Chlamydiaceae → Chlamydia/Chlamydophila group → Chlamydia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Birds → Digestive System → Ceca → Unclassified → Chicken Cecum → Chicken Cecum Microbial Communities From Brno, Czech Republic, Of Chickens Treated With Various Antibiotics

Source Dataset Sampling Location

• Location Name: Brno, Czech Republic
• Coordinates
  • Lat. (^o): 49.19522
  • Long. (^o): 16.60796

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028669	Metagenome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071339_1003373	F028669	AGGAGG	MYARREIKKQRFKCWSDQFITNVNKGDGERGGRTLLRIGVMGKGRRAIEKIERGKNCVKRG*