NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070915_101937

Scaffold Ga0070915_101937


Overview

Basic Information
Taxon OID3300004817 Open in IMG/M
Scaffold IDGa0070915_101937 Open in IMG/M
Source Dataset NameHypersaline lake viral communities from Bras del Port, Santa Pola, Alicante, Spain - SAL2 dirigido Enero 2015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Alicante
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)530
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline Lake → Hypersaline Lake Viral Communities From Bras Del Port, Santa Pola, Alicante, Spain

Source Dataset Sampling Location
Location NameSpain
CoordinatesLat. (o)38.19317Long. (o)-0.59268Alt. (m)Depth (m)58.6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062297Metagenome131N

Sequences

Protein IDFamilyRBSSequence
Ga0070915_1019371F062297GGAGGMSMDDLERCPRRYTVLAERVEDGRVVEQSVTGQSRAEELFARWDEGEQLCNLRVKCISAPMDDVTRHFEHDWPPTNNSPVSSDGGSTESATKGWETR*

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