Scaffold Ga0058863_11919424

Overview

Basic Information

• Taxon OID: 3300004799
• Scaffold ID: Ga0058863_11919424
• Source Dataset Name: Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1588
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Switchgrass Rhizosphere And Bulk Soil Microbial Communities From Kellogg Biological Station, Michigan, Usa For Expression Studies

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3912
  • Long. (^o): -85.383786

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011259	Metagenome / Metatranscriptome	293	Y
F011803	Metagenome / Metatranscriptome	287	Y
F037883	Metagenome / Metatranscriptome	167	Y
F042033	Metagenome / Metatranscriptome	159	Y
F070583	Metagenome / Metatranscriptome	123	Y
F081702	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0058863_119194241	F042033	AGGA	MNNQDRVLIRRGARELSVEEVERVGGGLHTDTVCTVPTEICPNKDGDASIGECGRC*
Ga0058863_119194242	F011803	AGGAG	MDNQTRVLIRRGARELTPTEADLINGGFVTLSLCTNSPSPDGDHRPGEVGC*
Ga0058863_119194243	F081702	AGGA	MDNQNRVLTRQGARELNAEEVEQVSGGLVHTNFITWGPTGRDGDGFLGEC*
Ga0058863_119194244	F070583	AGGAG	MNDNNRVLVRTGARELNRKETEQVSGGLRTLTACTWDPDFGRDGDGPPEC*
Ga0058863_119194245	F011259	AGGAG	MSRQEENRVLARAGARKLTIEEIDFVSAAAHTNVCTAATVATATHTGLGDGDGCSDSDADHSFI*
Ga0058863_119194246	F037883	N/A	PNQNEPGRVLNRMGDREVTEEEIERVSAGSGPPCRLTFTHLPKGGSDEDTQCP*