Scaffold Ga0007791_10001919

Overview

Basic Information

• Taxon OID: 3300004772
• Scaffold ID: Ga0007791_10001919
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0.5M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7588
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002869	Metagenome / Metatranscriptome	524	Y
F028513	Metagenome / Metatranscriptome	191	Y
F076069	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007791_1000191910	F002869	GGCGG	MNNEITTEMLDQTIQWCEQNAFWSKPSAVPRMQDFYFEKTRTSTKEDWPETFSLQELANALGEDPVRYRIYYSRDNLTLRLFVFRPRCTWHENKIMLDLGFVVAQDGDTENIPNQPVEQVVEE*
Ga0007791_1000191913	F076069	GAGG	MTILKSIYNFLENYGRCRAAVHLTSIGDHAGAQRIMMEDFQGWI*
Ga0007791_1000191915	F028513	AGGAG	MLTQLAEYFQKMFQSSQKPQTYSSELEAYIVKNSPQNTCDVDRLTRQFDMRQSGKGWMV*