Scaffold Ga0068403_15455

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068403_15455

Scaffold Ga0068403_15455

Overview

Basic Information
Taxon OID	3300004755 Open in IMG/M
Scaffold ID	Ga0068403_15455 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from Formosa Ridge, South China Sea - G1-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	623
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Cold Seeps → Sediment → Marine Sediment → Metagenomics Analysis Of Sediments Collected From Formosa Ridge

Source Dataset Sampling Location
Location Name	South China Sea, southwestern Taiwan
Coordinates	Lat. (^o)	22.11546667	Long. (^o)	119.28443333	Alt. (m)		Depth (m)	1146
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F076930	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068403_154551	F076930	GAG	MTEHKYIELTKRAFDLGFRQGYEIANRTLIDENTGKDEFANIVLETAINSLESTVFESIAAELDLMNEKYPAFDSWKVFSDGVIHGAGENFLDRTGNEE*

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