Scaffold Ga0066616_1011090

Overview

Basic Information

• Taxon OID: 3300004637
• Scaffold ID: Ga0066616_1011090
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI047_150m_RNA (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1862
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001048	Metagenome / Metatranscriptome	793	Y
F018265	Metagenome / Metatranscriptome	236	Y
F051476	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066616_10110901	F018265	GAG	MSMEKYTLRAVSITQNILELQKVNRELVTVRKIVTELEQRKMELISS*
Ga0066616_10110903	F051476	GAG	MTHWKVKLIIKDKLHKAELFEKLSDARLWAMKEAKLAVSHTMFNKTDIVADITSHEFA*
Ga0066616_10110904	F001048	GAGG	MKIVSTKQFWWRFNYLKRNGGEITVTDRTPEMDVKEFNRIELLVNSRVRWELGPENFMKWDSCGYKDIPTLAKAYGIK*