Scaffold Ga0066395_10001621

Overview

Basic Information

• Taxon OID: 3300004633
• Scaffold ID: Ga0066395_10001621
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7836
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005643	Metagenome / Metatranscriptome	394	Y
F016434	Metagenome / Metatranscriptome	247	Y
F054231	Metagenome	140	Y
F064306	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066395_1000162110	F016434	AGGAG	MRTVFAIITVTLLAIGPAAAGSAKSFAPGHHHTKGVHGVSSHAPGHVKKGLQMRSARGVSPGQMKY*
Ga0066395_1000162117	F005643	AGGAGG	MRSITLMGTAAVVLSATTLLAVPASAERICRQVCDEGFCRSRCIETGDRLYMYDRDRDYYYHRHRGLEFRGPGFNIDVGR*
Ga0066395_100016215	F054231	AGGCGG	VLNNLSEQIRECLQHAEECAQKAAELPNGSHFRQDFLQLEKRWLELARSIEFGESLDRFTKNIPKPNIKPNGHAI*
Ga0066395_100016218	F064306	N/A	MRKVLEYEQQAAECRQKAAQMKNPQQKKQLEDMADVWDRLARERRHGIVENNPDQT*