Scaffold Ga0066395_10000742

Overview

Basic Information

• Taxon OID: 3300004633
• Scaffold ID: Ga0066395_10000742
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12069
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (61.90%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031594	Metagenome	182	Y
F059390	Metagenome / Metatranscriptome	134	Y
F071508	Metagenome	122	Y
F092511	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066395_1000074215	F031594	AGGAG	MSVRPINFLPNGDVEVIYDERGHSGTIPAAEVRWTANVDGSANHNFIVLECPDGCGASSTHPVGGGAAPVEVQQMFVHKTGLEGCACGNVAAATNAVPEAHVHLNVARMDGSERWQLG*
Ga0066395_1000074217	F092511	N/A	MTDAYSDDQAAQITLLQSQQGLFTQALKAALEGRWTGAGSVEAFLYALDPNMQGALAPDPPVTESEYNAENPKA*
Ga0066395_1000074218	F071508	N/A	VTWDPTWFMPAQAYSWTCSVCSTTWVLQATDTAYQDADIYDARYAVGTEMGYPACVNETYGLMSQQCIVDELARHGLVARQAWCSFDEAYAIARTNTGTINPQGMYHFMALRGTQGADIAVANSAEGYYGVYSTLSREQFNALGPVSIVYVEGRS*
Ga0066395_1000074219	F059390	GGAG	MQITTVGSLSVTVGWLIAIVILILAILGLVGVLANTPLIIFGLIAGLAISRLL*