Scaffold Ga0069718_10070053

Overview

Basic Information

• Taxon OID: 3300004481
• Scaffold ID: Ga0069718_10070053
• Source Dataset Name: Combined Assembly of Gp0112041, Gp0112042, Gp0112043
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The National High-throughput DNA Sequencing Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1544
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location

• Location Name: Copenhagen, Denmark
• Coordinates
  • Lat. (^o): 55.685937
  • Long. (^o): 12.574205

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009600	Metagenome	315	Y
F011218	Metagenome / Metatranscriptome	293	N
F039112	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0069718_100700532	F011218	AGGAG	MKESMSSMQYYTNPAKRRKIDFILAECASLFANCDSTYAARQQAKYKEQELLGQIAKLDYHFAIQCGYLQQEN*
Ga0069718_100700533	F009600	N/A	MRVPATGELKSYHVVVGKVPSLNAFYASKHWTVRAKAKDKHCAEVLEQLQEYDCIPIQHVYITCKVNYRYDIDNSIMAVKFALDAFRKWGGVKDDSRAYVRKLKMEHDPDIHPDTAEIIFQGLVVSQS*LYL*
Ga0069718_100700534	F039112	N/A	MTLSLSQEVYSQTIVAQQASIQALQNKVQELQARIEVLEQQAILFI*