Scaffold Ga0062595_100084395

Overview

Basic Information

• Taxon OID: 3300004479
• Scaffold ID: Ga0062595_100084395
• Source Dataset Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1621
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.56
  • Long. (^o): -89.32
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011259	Metagenome / Metatranscriptome	293	Y
F037883	Metagenome / Metatranscriptome	167	Y
F070583	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0062595_1000843952	F070583	AGGAG	MNDQNRVLIRKGARELDREETGRVGGSLGTLTACTWDPDFGKDGDTSIGDC*
Ga0062595_1000843953	F011259	AGGAG	MSRQEDSRVLARFGARELTMDEIDHVSAAMQNHTNVCTAAMPFATATGSGDGDGCSDTDKDSSFI*
Ga0062595_1000843954	F037883	AGGAG	MSNQIEPNRVLNRMGARGLTEEEVESVSAAGPPCRLTFTHLPKGGSDEDTVCP*