Scaffold Ga0068965_1329931

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068965_1329931

Scaffold Ga0068965_1329931

Overview

Basic Information
Taxon OID	3300004471 Open in IMG/M
Scaffold ID	Ga0068965_1329931 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 57 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7223
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.13	Long. (^o)	11.88	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F068861	Metagenome / Metatranscriptome	124	Y
F097372	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068965_13299311	F068861	N/A	MPSVTASRLIAEYGSDQDYKFAGAVQVKTATTLTTTFGSVMRYEPWTNTGARELLKHHPIGVWKELSVRLAPRPGIYGRMCTFYGGWAAAGVVTPTTAEEMVALHGAIDVTYGGTGDPGTVKVQIPCEFDDTMKDLLKGPDNDNSRPVFFYAFTETDVVDKPANSDRFM
Ga0068965_13299312	F097372	N/A	MSDESIAHTIRNILEQCNSTVISIGHTEGHFLSSKQFAVLEECADTLENLESVAGVDTPTTSAITQASSEEDGFRARRLELARELKQKQIRLTAAPPGNRSQINLEIGKLLSERARLDKLIKQFDATTIA*

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