Scaffold Ga0063356_100300640

Overview

Basic Information

• Taxon OID: 3300004463
• Scaffold ID: Ga0063356_100300640
• Source Dataset Name: Combined assembly of Arabidopsis thaliana microbial communities
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1989
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere → Arabidopsis Thaliana Rhizosphere Microbial Communities From The Joint Genome Institute, Usa, That Affect Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Walnut Creek, California
• Coordinates
  • Lat. (^o): 37.931388
  • Long. (^o): -122.021761

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034330	Metagenome / Metatranscriptome	175	Y
F035656	Metagenome / Metatranscriptome	171	Y
F098572	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063356_1003006403	F098572	GAG	MIAFAMVGEVTGFLHIVRVDGPIDPVNAEYRIAFAPLGGRLRSRHAMVQGLDRLTAFLRQAHVPTPEIERAWRALATRRVHSIARVGLTPAQIEALGL*
Ga0063356_1003006404	F034330	AGG	MPPLRRGMTGLLMRLVEALALLLVATVLFMWVILAHPTPDERARLHDSMGQSTGMAWR*
Ga0063356_1003006406	F035656	N/A	MFAPTGNGEFRIATAAGLRAFLWEATIPPERIDEALDALRHDTEHEIPNVRLTLERMSKLGL*