Scaffold Ga0066223_1105509

Overview

Basic Information

• Taxon OID: 3300004461
• Scaffold ID: Ga0066223_1105509
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1538
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018266	Metagenome / Metatranscriptome	236	N
F050676	Metagenome / Metatranscriptome	145	N
F054358	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066223_11055091	F018266	GAGG	MFRVIIEGKFRENPINLSRAVKLLYNQDFTGSIRKENILWWKKYFLKVIHLPILYPKMGYIQIVKVYRDKKPSIRVVTVPTSSDKRELLVLNKIYGGDNG*
Ga0066223_11055094	F050676	AGGAGG	MQTKLPVKSRVADKYKPMLTYYAELIGLCHETVAETQSLKMLDPMGKKTTATSLFIRVCQRMDKSIDAKEIADKLENVSKINQQKEIA*
Ga0066223_11055095	F054358	AGGAG	MSSTKTPIRQAEMDHIDHFLETKYDDRKNTLKTEMQDIIDREAEENFEAFKNKLNVNKLHKEVYAFYKDHEKFANEMDTILLEKKGKLDNAINTLEDKLEQWKKVRKWENEISRSLLKQP