Scaffold Ga0066223_1023216

Overview

Basic Information

• Taxon OID: 3300004461
• Scaffold ID: Ga0066223_1023216
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 591
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015532	Metagenome / Metatranscriptome	254	Y
F046006	Metagenome	152	N
F090883	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066223_10232161	F015532	GAGG	MTLQDDKIMRHEIPNRMMSTTFTLPIDNRKVIGIVNYTAGAEGITPLAFWVKIKPTDSYIDRELRASGKLISRCLQHGEDLK
Ga0066223_10232162	F046006	GGAGG	VKEYLGPLAKYINLILLLIILHFCITVMVVNFRYIDRLNNTIDTMWHEIVQVKETNISLYQFIEEHGNDITGR*
Ga0066223_10232163	F090883	N/A	RMVSIADRMKRINNCRDMMSKATCPRMQAMWKRNYEKLLKKYWEEQGERILRAAGKIH*