Scaffold Ga0066222_1003182

Overview

Basic Information

• Taxon OID: 3300004460
• Scaffold ID: Ga0066222_1003182
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 689
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062182	Metagenome / Metatranscriptome	131	N
F069331	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066222_10031821	F069331	N/A	MSKYFNEIENNMNKDFLFVLDEAREFAGIPFVINSAYRSPEHPLSIKNPSSSH
Ga0066222_10031822	F062182	GAG	MELLHISSMVIKEQMKPRAMTQKEIISEIREEQKTMAEMQFRLAADLSNFFNKQELFNQRISDILENDEKTDKKGLVYEVAEVSKRVDEIELKGKVTAGKIAVTVTILTFIGGMVLKAINIFD*