Scaffold Ga0066224_1214697

Overview

Basic Information

• Taxon OID: 3300004457
• Scaffold ID: Ga0066224_1214697
• Source Dataset Name: Marine viral communities from Newfoundland, Canada MC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2022
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, CA
• Coordinates
  • Lat. (^o): 47.65117
  • Long. (^o): -52.695961

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032042	Metagenome	181	N
F033958	Metagenome	176	N
F090875	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066224_12146972	F033958	AGGA	LDGEILRMETLSRRLEFDKHGQIVFRFGDNWSLSVINRGYGASEGLFEIAPMVGGDIEFVEGVSTEFDNVRGYLTEEQVFEYVDKMAKITDHAAVLSDSNLPYW*
Ga0066224_12146975	F032042	AGGAG	MNKLYFSIGDSVMSRWGEAKIVRMDITSFGEPKYGDSVSNVPIDYNGPWIADLDNGHWAYGSQISLLQGHNEYA*
Ga0066224_12146976	F090875	N/A	MNREELELCGDRLDSVRDLLELLPNEIGSWKYAYWYKVYQYLDEKLEAAEKDE*