Scaffold Ga0066224_1108966

Overview

Basic Information

• Taxon OID: 3300004457
• Scaffold ID: Ga0066224_1108966
• Source Dataset Name: Marine viral communities from Newfoundland, Canada MC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1135
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, CA
• Coordinates
  • Lat. (^o): 47.65117
  • Long. (^o): -52.695961

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013466	Metagenome	271	Y
F060341	Metagenome	133	Y
F086180	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066224_11089662	F013466	AGGAGG	MNKYGFKKGDLLRWTDYVQDDDTHSPILRRRPKSVVGLFPGMRPAGLPREMNLAGDVIVLVGDKRVNWDGWQCDKLEKGEWTCK*
Ga0066224_11089663	F086180	AGGAG	MQVGDLVRVLVGEHKEDFPLGMVITFDEDDDPIVIERGQKLPHYRSHLEVIHESR*
Ga0066224_11089664	F060341	GAGG	MKVGDLVKFKTSAYSSIGLIIETGVYVGNKDVKVFWDGKNTYTEYSGVLEVISENNNN*